RNA id: AMCG00003135


Basic Information

Item Value
RNA id AMCG00003135
length 473
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00003135
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12710331 ~ 12711929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTCAGTTTATGATGAAGCATTATGGACTGAGAAACCAAGCCGTCCAAACATTCTTTAGAACAGTGCTTCCTGTTCCTCTTTTTGCTTTTCTGGGCGCCTTCAATGTAATGATCGTCCGAGGTGAGGAGTTTGAGAATGGGATCGAGGTCTTCGATGCCAATGGGAATGTGGTTGGCGTTTCACAGAAAGTTGGGTTGAAGgCTGTTGGTGAAACTGCAGTGTCTAGAGCTCTGCTCATCGGTACCACAGCAGCTGTGCCTAACCTGCTCATCAGTTTTATACAAAGGAGAAGATTCATCCAAAGGAGCCCATTGGTTCTAGCTCCACTAAGACACATCGCCACTGCCTTCGTGCTGGGACTAATGATCCCAGTTTCCTTCAGTCTGTTCCCACATGTTGGAAAGGTACAAAAGGCTAACTTGGAGGAGGAAttccagacagacacacagctatACTACCACAGAGGACTC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K23502 SFXN4; sideroflexin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177236 lncRNA downstream 104379 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 107300 12602822 ~ 12603031 (-) True G140904
TU177212 lncRNA downstream 348127 12357446 ~ 12362204 (-) True G140883
TU177074 lncRNA downstream 913317 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 920405 11786414 ~ 11789926 (-) True G140764
TU177299 lncRNA upstream 16345 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA upstream 16345 12728274 ~ 12739791 (-) True AMCG00003138
TU177329 lncRNA upstream 109973 12821902 ~ 12830926 (-) True G140971
TU177537 lncRNA upstream 695358 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 848590 13560519 ~ 13560839 (-) True G141175
AMCG00003136 mRNA downstream 10536 12681612 ~ 12699795 (-) True AMCG00003136
AMCG00003134 mRNA downstream 65082 12614005 ~ 12645249 (-) True AMCG00003134
AMCG00003133 mRNA downstream 124363 12579989 ~ 12585968 (-) True AMCG00003133
AMCG00003127 mRNA downstream 325305 12362262 ~ 12385026 (-) True AMCG00003127
AMCG00003126 mRNA downstream 546991 12158810 ~ 12163340 (-) True AMCG00003126
AMCG00003137 mRNA upstream 5692 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003138 mRNA upstream 16309 12728238 ~ 12739807 (-) False AMCG00003138
AMCG00003132 mRNA upstream 35507 12747436 ~ 12756469 (-) True AMCG00003132
AMCG00003145 mRNA upstream 48913 12760842 ~ 12785286 (-) True AMCG00003145
AMCG00003142 mRNA upstream 112018 12823947 ~ 12848833 (-) True AMCG00003142
TU177067 other downstream 976569 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 1062712 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2378959 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3472601 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3862491 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 139092 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 139092 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 139092 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 149497 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 715365 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile