RNA id: AMCG00003136


Basic Information

Item Value
RNA id AMCG00003136
length 6873
RNA type mRNA
GC content 0.50
exon number 22
gene id AMCG00003136
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12681612 ~ 12699795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGCGCAGACGCACACGCAGCCGCGCGTCGTAAAGTGGGGCCGGTGACGCGCTCGCCGTCCTTTCCGAGGAGGAGCTTGTCGGAGCGGGTTGGAGCCGGTCAGCGCGGATGGATGTGTTAACAAGGATTTTATAAATTTAAtacctttttcattttgaaatccatCCCGTAAGCGAGCAAGAACCATGCCGGCATACTTTCAGCGCCCCGAGAACGCCCTTAAGAGGGCCAACGagtTTCTTGAAGTTGGCAAGAAGCAGCCAGCTCTGGACGTTCTTTACGACGTGATCAAGAGCAAAAAGCATCGAACATGGCAGAAGATCCACGAACCCATCATGCTCAAGTACCTCGAGCTCTGTGTGGACCTCCGCAAGAGCCACCTGGCTAAAGAGGGCTTGTACCAGTACAAGAACATCTGTCAACAGgtTAACATCAAGTCACTGGAGGATGTTGTCCGGGCTTATCTGAAACTGGCTGAAGAAAAGACTGAAACAGCTAAGGAGGAGTCCCAGCAGATGGTGCTTGATATTGAGGATCTTGATAACATTCAGACTCCTGAGAGTGTGCTGCTGAGTGCTGTCAGTGGGGAGGACACCCAAGATCGAACTGACCGCCTGCTGCTGACTCCATGGGTGAAGTTCCTCTGGGAGTCTTACAGACAGTGCCTGGACCTCCTCCGTAACAACTCGAAAGTGGAGCGCTTGTACCATGACATCGCACAACAAGcCTTCAAGTTCTGCCTGCAGTACACCCGTAAAGCGGAGTTCCGCAAATTGTGCGACAATCTGCGCATGCATTTGGGCCAGATCCAGCGCCACCACAACCAGAGCACAGCCATCAACCTCAGCAACCCCGAGAGCCAGTCTATGCACCTGGAGACCAGGCTCGTGCAGCTGGACAGTGCCATCAGCATGGAGCTCTGGCAGgaagCTTTTAAGGCAGTGGAAGACATCCATGGTCTGTTTGCATTGTCTAAGAAGCCACCCAAACCTCAGCTAATGGCCAACTACTATAACAAAGTGTCGACCGTGTTCTGGAAGTCCGGCAATGCCCTGTTCCACGCCTGCACCCTGCACCGCCTCTACCACCTGTCCAGGGAAATGAGGAAGAACCTGACCCAGGAGGAAATGCAGAGAATGTCTACCCGTGTCCTCCTGGCAACCCTGTCTATCCCCATCACCCCCGAGCGTACTGACATTGCACGCCTCCTGGATATGGATGGCATCATTGTGGAAAAACACAGGCGGCTGGCGACACTTCTAGGCCTGCAGTCCCCACCTACCCGCCAGAGCCTCATCAACGACATGgTGAGATTTAACCTGCTGCAGTACATCGTACCGGATGTGAAGGAACTGTACAATTGGCTGGAGGTGGATTTTCACCCTCTGAAGCTCTGTGGCAGAGTAACCAAAGTTTTGAACTGGGTGAGAGACCAGGCCGAAAAGGAGCCTGACCTCCAGCATTATGTTCCTCATCTGCAGAGCAACACCATTCTCCGACTGCTCCAGCAGGTGGCTCAAATCTATCAGAGTATAGAGTTCAGTCGTCTGGCGTCCCTGGTTCCCTTTGTCGATGTCTTTCAGCTGGAGCGCTCCATTGTCGATGCTGCCAGACACTGCGACCTGCAGGCAGGTTACCACTGTTGCAACATGGTGAGGATTGATCACACGTCTCGTAACCTGAGTTTCGGGTCAGACTTGAACTACTCCACCAAGGAGGACTCCCCCGTAGGACCCTTCTTGCAGAACATGCCCTCTGAGCAGATCCGGAACCAGCTCACAGCCATGTCCTCTGCGCTGGCCAAGGCCATCGATGTCATCAAGCCTCCATCCATACTGCAAGAACGTGAGGAACAGAACCAGCAGGCCATTGCAGCCTACTTGAAGAATGCCCGCAAGGAGCACCAGCGCATCCTGGCCCGCCGGCAGACCATCGAGGAGCGCAAGGAGCGCCTGGAAAACCTGAACATCCAGCGGGAGAAGGAGGAACTGGAGCAGCGCGAGGCCGAGATGCAGAAGGTGCGCAAGGCGGAGGAGGAGCGCCTGCGCCAGGAGGCCAAGGAGCGCGAGAAGGAGCGCATCATGCAGGAGCACGAGCAGATCAAGAAGAAGACTGTGCGTGAGCGCCTGGAGCAGATCAAGAAGACTGAGCTGGGGGCCAAGGCCTTCAAAGACATTGATATTGAGGATCTTGAGGAGCTGGACCCTGATTTCATCATGGCCAAGCAGGTGGagcagctggagaaggagaagagagagTTGCAGGAGCGCCTGAAGAACCAGGAGAAGAAGATTGATTACTTTGAAAGAGCCAAACGCCTGGAAGAAATACCGCTAATTAAAAAGGCTTATGAGGAACAACGCATTCAAGACATGGAGCTGTGGGAACtacaggaggaagagaggATCAGCAACATGAAAGTGGAGCGAGAGAAGGCCTTGGAACACAAACAGAGGATGTCCCGAATGATGGAAGACCAGGAGTATTTTGTCTCCAAGATCACAGCTGCTCGCCAGTCTGTCTATGAGGAAAAACTTAAACAATTCCAGGAGCGATTGGTCGAAGAGAGGAAGAGGCGCCTGGAGGAGCGCAAGAAACAGCGTAAAGAGGACCGAAGAAACACATACTAccaggagaaagaggaggaggccCAAAGAATCCATGAGGAACAACTTAAAAAAGaaCGGGAGGAGCGGGAGCGTGTGGAGAGGGAAcagcgggaggaggaggagagagagtaCCAGGAGCGTCTGCGCAAGCtggaggagcaggagaggaaGCAGAGAGCCAGGCAGCAGGAGATTGAGGAGCGGGAGCGACgcaaggaggaggagaggaaaacCCCTGAGGACAAGGTTACCAAGGAGGCGCCTCGCTGGGCTGAGAAAGAAGAGGGTGGCTGGAGGAAGCGCGTTGAGGCTGGctctggtggtggtggtggcggcaCCTCCACTGGTGGCGAATCCGAATGGAGACGCCCGGTTCCTGATCGTGATTGGCGCAAAGAAGAACGTGACGAGGAGAAGCCTGCATTCCGCCGCGAGGAAGAACGGGAGCTACCATTCCGCaggggaggagaagagaggCCTCGTAGGGGTCTCTCTGATGAAAGGGTCCCCCGTAGAGCCTTTGATGATGAGCGAATGCCCAGGAGGGCAGCGGATGAGGAGCGGGTTCCCAAGAGAGGATTTGATGAGGACCGGCCACCGAAGAGAGCTGTGGAAGAGGACAGGCCTATCAGGAGGGGCTTTGATGACGACCGAGGCCCCAGGAGAGGGTTGGATGAGGACCGGCCTCTCAGAAGAGGGGCTGATGATGACTGGGGTCCCCGGCGGGGGGGTGATGAGGAGAGGGGGCCCAGGAGAGGTATGGATGATGATATGGGACCCCGACGAGGAGAAGATGCGAAGCCTTGGAAACCTCTGGGCAAACCAGGTGGCTGGAGGGAACGGGAGAAGGCCCGCGAGGAGAGCTGGGGTCCACCCCGTGAAATGGGGGGTCGTAACGAAGGCGATGAGCAAgatggagaggaggcagaggacGCAGACAACGACAACCTGAAAGAGACCCGCCCTCCAAGAGAGGAAGGCGGCGGTGGCTGGAGGCGGCCCGCTGCGCCCGAGGAGACGAGCAGCTGGAGGGACTCCTCTCGCCGCGACAACTGGGACGAGCGGCGCGGGGACCGTGACCGGCGTGATGACCGCCCTGTCCGCGACCTGAGAGAGCGCAGGGATGACCGGGAACGCCGGCCCCCTCCTCGCACAGACCGGGGCACCTGGCGCCGCGGTGGGGACGAGGAGCGCCGAGACGAACCCCCTCGCAGGGTCCCCCCGCCccgggagaaagagagagagcgtgaAGCGGACAGGGGGGCTTGGCGCTCTGACAAAGACAAGGAGATCCAGCGCCGCACCAAGAACGAGACTGACGACGATGGCTGGACCACAGTGCGCCGCTAACACGCTGTCCTGAGCCGCTGCTTTATTGTTGAACAGGGGCCTCTGAATGTGTGCCCCTCTCGATATTTAACCTTACACAGTTAACCTTTCAGGTGGTGTGCCctcataacatttttaaaccgTGACAAAGTCATGAAGCTAggaatgtggaaaaaaaaaatctgatgtgaaaattatatacaaaatataactttGTGTAGACTGTTTTCACTGAAGGCCAATTTCACATATCTTCACAAACTTTGTATCTGGGAAATCCGCATCTTACATTTAATGGATATTAATTAAAGGACTTCTTGTGCTTAAGATTGTCTCCAGGATCAGGTTCTTTCGTGTGTTACACTAGGAAAACCTTAGGGGGGGGGtgatttatttcacaatattcTCTGCCAGTTTAGAAAATCGAATGAACAGGATGCTGCTcttttctgtgcatttaaaGTAGAGTATTGCtgatagacttttttttttttttttttacttttacattgaTAATGGTCAAAACATCTGtaaaatcaattcaatttttgATTTGTTAGTAGTGaggttagtttgtttttcaactgtGACAACATAGGTGCCTGTATCAaagtcaaatatatacatttaactaAGAAATGTAGTTGTCTGTCAATATAAGAGTCTGAAGCTCGTTTAGTAATTGGTCtcaagaagaaaagagaaatgcatGCATCtggttaaatatatttcttataaaTAAAGTTGCTTAAACATGCTACAGCCTCCTGTTTTCTCAAAGGAGAGGAAATATTTTCACACACTTTAGACTGAATTCAGAAATCACGTTTGGTTGGAGACATTTATCTGCTTATAAACATTTCTATGAAACTAGCTGGGGAAGGGATGCTTTGATTATCCATAAATGATAAAACCACACAGATGCCAATGGGAAAAGAGATTAAATAGAATTAGTCACTCACTGTTGcaggggaaattaaaacattttaaattctgtgGATTATTACATAATGGTAATAACCTGATGGTTGGGAAAGATTGTGGTGTACATAATAGAATTAATCAAGCCGACTAGGGTGGTTTAATCTAACTACTTATCAATTATAGTCACACACTGAAACATTACAGAGAATGGTTAATTGTTCTGCATCCCTTCCAGCTTGTTTTGCCGAGTTTAGCGAGACACATTGCTATATCTCGGAATTGGTTCAATCGTTGAGTATTTAGTTATATTAAATCCATTGCTTGACCAGGTTACTAATATTGCTAATTTCAAATCCACCGTATCAAGCTCCCCGTTACAGAAAGTCCTCTTCAGAGAaacttaattagttaattgaagtTCCACTTTTCCCCGGCAGGTGCCAGCAGCCAACTATAAAATCATCAGAAAAAGCAAGCTGTTAAATAAATTTATTTGACACATTACACCGTGCTTAAGTCATAACCCGAAATGTCGCTTGTTATATATTAGTATCTAATAAGCATACTTCAGTCTAAACatcaatagaaaataaatcctaaaaAAATCAAACGCACAATTAAGTTATACCTCATTAGAACAGTCTTACGGCGTAGAAAGGCATTTTTGTAGACGAACAATTACAAACACCTGAGGTAGATTTCTGCACTCATCTAAGCCTATTCCCTTCCcaatacagaaacacaataCATTCACGATCTTCCGCTCCTTGGCAGTTTGAAACgaaaacaataaattataatagTTGTATTAAAACTACTCCTCTTAAAGCAGAACGCAATCCTATATTTTGTTAGAAACTTCTGGAAACCGGACTGCGACAAGGCATCAATTAAGAAGAGGCTGCTAGGACTAGGCTTGTGTAACTTACTGAACATATAAAGCAATACACAGGAATTGCAATTCGAAGATATCCATTTATGACGTCAATGGAATGTACAAATTGAGCTTAATTGGGTCGGTTCTAAAGTAACACTTTCGGAAGTTGAATCAGTCTACTTTGCGCCTTATTgtttataaactttaaaaatatcatCATCACGAATGTCAACCCCctttttgaaatacaacatCACACGTTTGCTGTCAATCACAGTCAAgtataataagaagaagaataaaaaaacgaTATTGAAAGCACTAGCGGATCTTCTTTCCTGCCAGGCACCTTGGCTTCTGCGCTTTTGCAGCACTGACTTGCAGTTTGGACAGAGGACAGTATTTGATCGTGTGCGCATTGTCCCCATTGGCGCCGCACAGGGGACAAGTGTACCTCCTCAGCACTGGACACAGGACCCTCCCGTCCGGCCCCTTTAAAATGTGCGTGCTGTAGCGGGCCACGCTTTCTTTATTATTCCTGCAAAAGACACACACTTGCATGTCCATCTTCCCCCGGTGCTTGTGCATGGTCTGCTGGCTCCTGCCGTCCACCATGCTCCACTGAAGCGCCCTCTCCCCCGCATACTCCGGGGAACCGCCGAGCAGGGCTGGGCTGGACCGGCCGGAGAAAGCTCTGAAATCCGCGTACCTGTCCCGAAGCACCAGATCTCCGTGGGCACAAAAGCCAAACTCATTGAAATCCACCGATTTGTCCAAATAAGACGCCTTTGCAGTCAAGTCCACCTCGGTGCTGGTCCTGATGGTGCTCTGGCCCCTGCTGGCCACCGCTTTTGTGCAGGTGATGAGGGTGGTCAGCCCCAGGTAGTCATTCCAGGAGTTGAACGCGTTCTCGTACACGTTGCTCACATACCTGGAGGTCTGCAGATAGTCAGCCGGCCCGTTTTCCAGCTTGTCTTCCATGGCTTGAAAAGTTTCCATCATGGTTGCACGGCTCAGCAGTGGATGCGTGTTGGTTGTGTAATAATCGTTATCGCATTTAATTCAACGTGAGCCAAACTGCGCTTGAAACGCAGGCATCTGCTATTAAAATAGCAGGCTTGTGGAAGACCCG

Function

GO: NA

KEGG:

id description
K03254 EIF3A; translation initiation factor 3 subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177236 lncRNA downstream 75660 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 78581 12602822 ~ 12603031 (-) True G140904
TU177212 lncRNA downstream 319408 12357446 ~ 12362204 (-) True G140883
TU177074 lncRNA downstream 884598 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 891686 11786414 ~ 11789926 (-) True G140764
TU177299 lncRNA upstream 28479 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA upstream 28479 12728274 ~ 12739791 (-) True AMCG00003138
TU177329 lncRNA upstream 122107 12821902 ~ 12830926 (-) True G140971
TU177537 lncRNA upstream 707492 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 860724 13560519 ~ 13560839 (-) True G141175
AMCG00003134 mRNA downstream 36363 12614005 ~ 12645249 (-) True AMCG00003134
AMCG00003133 mRNA downstream 95644 12579989 ~ 12585968 (-) True AMCG00003133
AMCG00003127 mRNA downstream 296586 12362262 ~ 12385026 (-) True AMCG00003127
AMCG00003126 mRNA downstream 518272 12158810 ~ 12163340 (-) True AMCG00003126
AMCG00003123 mRNA downstream 583199 12090153 ~ 12098413 (-) True AMCG00003123
AMCG00003135 mRNA upstream 10536 12710331 ~ 12711929 (-) True AMCG00003135
AMCG00003137 mRNA upstream 17826 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003138 mRNA upstream 28443 12728238 ~ 12739807 (-) False AMCG00003138
AMCG00003132 mRNA upstream 47641 12747436 ~ 12756469 (-) True AMCG00003132
AMCG00003145 mRNA upstream 61047 12760842 ~ 12785286 (-) True AMCG00003145
TU177067 other downstream 947850 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 1033993 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2350240 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3443882 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3833772 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 151226 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 151226 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 151226 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 161631 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 727499 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011674 False 4667 mRNA 0.50 22 NC_007124.7 19283936 ~ 19317569 (+)
grasscarp (Ctenopharyngodon idella) CI01180000_09895403_09900928.mRNA True 1977 mRNA 0.50 12 CI01180000 9895403 ~ 9900928 (+)