RNA id: TU177301


Basic Information

Item Value
RNA id TU177301
length 1405
lncRNA type sense_over
GC content 0.40
exon number 5
gene id AMCG00003138
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12728238 ~ 12739807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACACTGGAGTGGGAGTCCGTCTGCTCGCCTGGCCATTCACGGCCCGGGACCGACTGCGTGCTGGAGCTCGTCTCGGTttggaaagaaaggaaggaaggaagcaagcaaaaaaaaaagaagaaaagaaaacacgccactgtatatacagtacgcAGCCTCGCTTGATTTCATCTGAAGGAGAAGGACGACAGCAAACTCAATATCCAGGAGACCGCGTCCCCCAAACAGACTAGCAAAGGAATAGGGGCCGAGGGAAACGCAGgaaagaaaacaaataatgtccAGGAGAAGGAATGACAGGTGTTGAAGAGAACTGGTGAAGACCTGTGTTCCTGGCTGGAGAGGAGTTGATCTGCCAGCACCTAGGAACAACCAGTCTTCAGCTGCCAGTTCATTaccagaaacacaaaaaaagaatcTCAACTAAATTTCCCATGGACTTTCAACAGCAGAAGCTGAACGGAGAAAACTTACAAGTGTACAGTTCATCAAGGGTTGTTCAAGAACAAGCAAATAACCCTGTACCTCTTCATTGTCCGAAGGAAAATCGACAAGATGGAGCCACTTTTGACTCGCAAGATGGCAACTCGCAAACCCGCAAAGCAACCCTGGAGCTTCACAAGGAAGTCCTGGCTCTTCAGAAAGAAAAGCTCATCCTAGAGAATGAAAAACTTCAACTACAAATTGAAAAGATCAAACTCAGGAAAGCGAAAATATGCAGCTAATCTCTAGGTCGAGCTGAAGTTAAGACGCACAAATTTGACAAGTAATGTTATGTATCAATGTCTTCAGTCAATACACCACCGGCTGATTTAGTATGGATATCTTCTTCAATAAGTTAGcagttaacaaaacaaatgtagaagtaaattatgcaaaatacaaaaaggaaaaaaaaaaaatcttgctcAGTATGAAACATGTTTAGATCAACCGAAGAAGTCTTTATGTGCTTtgactgtatttttgtttttgatgcatGGGAGAGGGGTGGATCTGTATGACTTCTGTCTACATCGGCAATGGGACAGAGGTGATCATTTTAGACACCCTGTCCACAAGGAGGTTAATGTCCAACTTTGactaaatgttttcattaaaggtCCACtgatgcatacattttcaattaattctaataaaaagaaaagcacaccaTTTGCAAAACTAAGGTCAGGAAGCATGTTACTCACAGTTGTCTTAACATAAGTTGAGCTTTCATATCACTTTCAGTTTGTTTAGTGGTAGGAAGAAACCAGCcaaattttgttttactattgtttctaaattattgcttttttatgtgttttttttttatgttggtttgattctgtttttttacatttttaaaatgatttttccataatttattttactctttctGCTTTTTCTGAATATACTGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177236 lncRNA downstream 122322 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 125243 12602822 ~ 12603031 (-) True G140904
TU177212 lncRNA downstream 366070 12357446 ~ 12362204 (-) True G140883
TU177074 lncRNA downstream 931260 11795976 ~ 11797014 (-) True G140763
TU177075 lncRNA downstream 938348 11786414 ~ 11789926 (-) True G140764
TU177329 lncRNA upstream 82111 12821902 ~ 12830926 (-) True G140971
TU177537 lncRNA upstream 667496 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 820728 13560519 ~ 13560839 (-) True G141175
TU177625 lncRNA upstream 1026165 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 1083623 13823414 ~ 13834549 (-) True G141219
AMCG00003137 mRNA downstream 6853 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003135 mRNA downstream 16345 12710331 ~ 12711929 (-) True AMCG00003135
AMCG00003136 mRNA downstream 28479 12681612 ~ 12699795 (-) True AMCG00003136
AMCG00003134 mRNA downstream 83025 12614005 ~ 12645249 (-) True AMCG00003134
AMCG00003133 mRNA downstream 142306 12579989 ~ 12585968 (-) True AMCG00003133
AMCG00003132 mRNA upstream 7645 12747436 ~ 12756469 (-) True AMCG00003132
AMCG00003145 mRNA upstream 21051 12760842 ~ 12785286 (-) True AMCG00003145
AMCG00003142 mRNA upstream 84156 12823947 ~ 12848833 (-) True AMCG00003142
AMCG00003144 mRNA upstream 111239 12851030 ~ 12854491 (-) True AMCG00003144
AMCG00003143 mRNA upstream 122504 12862295 ~ 12869324 (-) True AMCG00003143
TU177067 other downstream 994512 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 1080655 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2396902 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3490544 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 3880434 8847032 ~ 8847840 (-) True G140006
TU177331 other upstream 111230 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other upstream 111230 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other upstream 111230 12851021 ~ 12855341 (-) False AMCG00003144
TU177373 other upstream 121635 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 687503 13427294 ~ 13430324 (-) False AMCG00003164

Expression Profile