RNA id: AMCG00003141


Basic Information

Item Value
RNA id AMCG00003141
length 1662
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00003141
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12878685 ~ 12882998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCATGTTAGTTTCAGATGAAGTTTTAGCAGCCGAGGCAGGCAGCGCACCCACTTTGCTCCAGGGAGGACAGACAGTGAAAGTGCGGCAGAAATGGCAGCTCGTCTTTTCCTCCGGGCTTCGTGCAATGCGGTTCGTTTGGCCAGCGCAAATGCAGCCCCCAGAGCTTCCCTGCGGGCCATAGCCACGGAGAAGGGAATCCCAACTGATGATGAGCAAGCCACAGGACTGGAGCGTCGCTCCTTACAGGCTTTGAAGAAAGGACAGGACCCTTTCAGCATTTTCAGGCCCAAGACATATACAGGAACCAAGGAGGACCCGCATATAGTTCCCTGCATTGGCAACAAGAGACTGGTTGGCTGCCTGTGTGAGGAGGACAACACGGCCATCGTGTGGTTCTGGCTCCATGAGGGAAATGCCCAGCGCTGCCCCTCCTGCGGCTCTCATTACAAACTGATCCACCACGATCTCCCGCATTAAAACGCAAGGCAGAGATATTGCTCCGCTCatgaacagatttattttttcaccaacACAAAGGGAAGTTGGTCTCACTTGCAAAAGAATGTgtgcactttaaataaaactaaaccaaGAAACGATTGTCAGacatcattttttccccccgaCGAGCTGAGGGGATCGCACTTGACACAATTATACATTCAGATTCTCTTCAGCCTTCTGTGGGGGTTTGTTGAAGCGAGACGACACACAGAAAAGGATTTGCACTTGCCCCTATCTTAAgagaacaaaatgatgtaaTTTGTGTGGTGCCACTAGAAGGTAGGAAACACACCTGAAATGAGCATTATTATGCTAATAAAACGTGTATTTGCACTAACACATCGATAACATAAACCATCCCACCTTGCCGTTTTAAATGTAGCTGCTAATTTTATACAGAGTATCTTATCAGTAATACAGAAACTcagattttataaaaacaaatgctgatgGCACAGAAACTAACATAAATCAATTTGTTCAAGTATTTGATTAATTCTACATAGGCTACTGCATGCCCCCAAGATTGTGAACGCCTGGAAAGTTACCCATACAAtctaatattttaagaaatgatCCACAAGAGGAAACGTTCGCTTTAATTGTACACAACTCCAGCTCCGAGTTTAGCACCCCCCCTGCCCCGACCCCGAACAGTGCACATGGTCCTGAACAAGTCTGTTAAAAAAAGACCACACTTTACACGCAACAGTAAGCGATTACATTCAAAAtagtgatcagtgccaaaatgtACTGATGCATCACTTAGATAAGATAAGTAACTGCTAatgttaaatgcatattttaatgcagctagaaaacaatgaaaaaaaactaaaatgaagaaacaaataagCATTGACTAAAATCAGAAAGCAGTTTGTCTTCCAGATAGAAACCAAATTTTCCCTGTTTAGTCCTTCAGGGGGCAAATccacaaataaatgaaggaaCAGTTTGAGAATGGGGTCCGGCAGATGCATTCGGACACAAAGCCTCTCATGACCCAGGTTTCAGGTCGCCCTCTTGACTGTTCctaatttgtatttctcctCTCGTCTTGAAACAATTGTGGCTAATGGATTTCTTAAAGTGCCTTTTTACACATTCTTCAGATTCCATCCAagtcagtcaattaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177316 lncRNA upstream 47583 12821875 ~ 12831106 (+) False G140961
TU177315 lncRNA upstream 54059 12821875 ~ 12824630 (+) True G140961
TU177211 lncRNA upstream 493619 12384676 ~ 12385070 (+) False AMCG00003129
TU177208 lncRNA upstream 504858 12371999 ~ 12373831 (+) False AMCG00003129
TU177201 lncRNA upstream 592413 12286047 ~ 12286276 (+) True G140872
TU177437 lncRNA downstream 228996 13111737 ~ 13111936 (+) True G141066
TU177565 lncRNA downstream 677857 13560598 ~ 13560839 (+) True G141156
TU177596 lncRNA downstream 842169 13724910 ~ 13735516 (+) False AMCG00003168
TU177650 lncRNA downstream 960438 13843179 ~ 13843515 (+) True G141220
TU177652 lncRNA downstream 962005 13844746 ~ 13844952 (+) True G141222
AMCG00003140 mRNA upstream 3655 12870027 ~ 12875034 (+) True AMCG00003140
AMCG00003130 mRNA upstream 130853 12743746 ~ 12747836 (+) True AMCG00003130
AMCG00003139 mRNA upstream 155139 12723326 ~ 12723550 (+) True AMCG00003139
AMCG00003131 mRNA upstream 170457 12701128 ~ 12708232 (+) True AMCG00003131
AMCG00003128 mRNA upstream 196267 12681742 ~ 12682422 (+) True AMCG00003128
AMCG00003150 mRNA downstream 63063 12945804 ~ 12948577 (+) True AMCG00003150
AMCG00003149 mRNA downstream 87964 12970705 ~ 12982068 (+) True AMCG00003149
AMCG00003151 mRNA downstream 117424 13000165 ~ 13000605 (+) True AMCG00003151
AMCG00003156 mRNA downstream 124071 13006812 ~ 13019477 (+) True AMCG00003156
AMCG00003157 mRNA downstream 146345 13029086 ~ 13056989 (+) True AMCG00003157
TU177286 other upstream 138922 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 504329 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 1390805 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 1666578 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 2121849 10754901 ~ 10756840 (+) True G140478
TU177434 other downstream 223715 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 1298039 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 1405066 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 1718576 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 3671270 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile