RNA id: TU177338


Basic Information

Item Value
RNA id TU177338
length 1923
RNA type TUCP
GC content 0.44
exon number 4
gene id AMCG00003141
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12878685 ~ 12882998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCCATCATGTTAGTTTCAGATGAAGTTTTAGCAGCCGAGGCAGGCAGCGCACCCACTTTGCTCCAGGGAGGACAGACAGTGAAAGTGCGGCAGAAATGGCAGCTCGTCTTTTCCTCCGGGCTTCGTGCAATGCGGTTCGTTTGGCCAGCGCAAATGCAGCCCCCAGAGCTTCCCTGCGGGCCATAGCCACGGAGAAGGGAATCCCAACTGATGATGAGCAAGCCACAGGACTGGAGCGTCGCTCCTTACAGGCTTTGAAGAAAGGACAGGACCCTTTCAGCATTTTCAGGCCCAAGACATATACAGGAACCAAGGAGGACCCGCATATAGTTCCCTGCATTGGCAACAAGAGACTGGTTGGCTGCCTGTGTGAGGAGGACAACACGGCCATCGTGTGGTTCTGGCTCCATGAGGGAAATGCCCAGCGCTGCCCCTCCTGCGGCTCTCATTACAAACTGATCCACCACGATCTCCCGCATTAAAACGCAAGGCAGAGATATTGCTCCGCTCatgaacagatttattttttcaccaacACAAAGGGAAGTTGGTCTCACTTGCAAAAGAATGTgtgcactttaaataaaactaaaccaaGAAACGATTGTCAGacatcattttttccccccgaCGAGCTGAGGGGATCGCACTTGACACAATTATACATTCAGATTCTCTTCAGCCTTCTGTGGGGGTTTGTTGAAGCGAGACGACACACAGAAAAGGATTTGCACTTGCCCCTATCTTAAgagaacaaaatgatgtaaTTTGTGTGGTGCCACTAGAAGGTAGGAAACACACCTGAAATGAGCATTATTATGCTAATAAAACGTGTATTTGCACTAACACATCGATAACATAAACCATCCCACCTTGCCGTTTTAAATGTAGCTGCTAATTTTATACAGAGTATCTTATCAGTAATACAGAAACTcagattttataaaaacaaatgctgatgGCACAGAAACTAACATAAATCAATTTGTTCAAGTATTTGATTAATTCTACATAGGCTACTGCATGCCCCCAAGATTGTGAACGCCTGGAAAGTTACCCATACAAtctaatattttaagaaatgatCCACAAGAGGAAACGTTCGCTTTAATTGTACACAACTCCAGCTCCGAGTTTAGCACCCCCCCTGCCCCGACCCCGAACAGTGCACATGGTCCTGAACAAGTCTGTTAAAAAAAGACCACACTTTACACGCAACAGTAAGCGATTACATTCAAAAtagtgatcagtgccaaaatgtACTGATGCATCACTTAGATAAGATAAGTAACTGCTAatgttaaatgcatattttaatgcagctagaaaacaatgaaaaaaaactaaaatgaagaaacaaataagCATTGACTAAAATCAGAAAGCAGTTTGTCTTCCAGATAGAAACCAAATTTTCCCTGTTTAGTCCTTCAGGGGGCAAATccacaaataaatgaaggaaCAGTTTGAGAATGGGGTCCGGCAGATGCATTCGGACACAAAGCCTCTCATGACCCAGGTTTCAGGTCGCCCTCTTGACTGTTCctaatttgtatttctcctCTCGTCTTGAAACAATTGTGGCTAATGGATTTCTTAAAGTGCCTTTTTACACATTCTTCAGATTCCATCCAagtcagtcaattaaaaaaaaaaaaaaaaaacatacaacctGTCTGTGAAGTCTAATGACGCACTACTCTTTTTAGTATTGTGTTTAAGCAACATTACACTAAGTTGAAGCCTTCGTAGTGGTCGATGGCCTGAATGAGTTTGGCATGTAGTGTCTCTCGGTCCGTGTATTTGGGCAGATCCAACAGGTTGAAGCAGGTGTGGGCCACGGGCAGGTACTGGTCTCCTCCTCCTGTGGGCTGGATCACCAGTTTAAGGCTTTTCATGCCCATTATGGGAATTCGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177316 lncRNA upstream 47579 12821875 ~ 12831106 (+) False G140961
TU177315 lncRNA upstream 54055 12821875 ~ 12824630 (+) True G140961
TU177211 lncRNA upstream 493615 12384676 ~ 12385070 (+) False AMCG00003129
TU177208 lncRNA upstream 504854 12371999 ~ 12373831 (+) False AMCG00003129
TU177201 lncRNA upstream 592409 12286047 ~ 12286276 (+) True G140872
TU177437 lncRNA downstream 228739 13111737 ~ 13111936 (+) True G141066
TU177565 lncRNA downstream 677600 13560598 ~ 13560839 (+) True G141156
TU177596 lncRNA downstream 841912 13724910 ~ 13735516 (+) False AMCG00003168
TU177650 lncRNA downstream 960181 13843179 ~ 13843515 (+) True G141220
TU177652 lncRNA downstream 961748 13844746 ~ 13844952 (+) True G141222
AMCG00003140 mRNA upstream 3651 12870027 ~ 12875034 (+) True AMCG00003140
AMCG00003130 mRNA upstream 130849 12743746 ~ 12747836 (+) True AMCG00003130
AMCG00003139 mRNA upstream 155135 12723326 ~ 12723550 (+) True AMCG00003139
AMCG00003131 mRNA upstream 170453 12701128 ~ 12708232 (+) True AMCG00003131
AMCG00003128 mRNA upstream 196263 12681742 ~ 12682422 (+) True AMCG00003128
AMCG00003150 mRNA downstream 62806 12945804 ~ 12948577 (+) True AMCG00003150
AMCG00003149 mRNA downstream 87707 12970705 ~ 12982068 (+) True AMCG00003149
AMCG00003151 mRNA downstream 117167 13000165 ~ 13000605 (+) True AMCG00003151
AMCG00003156 mRNA downstream 123814 13006812 ~ 13019477 (+) True AMCG00003156
AMCG00003157 mRNA downstream 146088 13029086 ~ 13056989 (+) True AMCG00003157
TU177286 other upstream 138918 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 504325 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 1390801 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 1666574 11209573 ~ 11212111 (+) True G140613
TU176681 other upstream 2121845 10754901 ~ 10756840 (+) True G140478
TU177434 other downstream 223458 13106456 ~ 13110634 (+) True AMCG00003158
TU177775 other downstream 1297782 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 1404809 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 1718319 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 3671013 16554011 ~ 16559206 (+) False AMCG00003256

Expression Profile