RNA id: AMCG00003143


Basic Information

Item Value
RNA id AMCG00003143
length 579
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00003143
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12862295 ~ 12869324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCGTTGCTGAACTGCAAGACCGAGGACTTGGAAGATTATTATGGTTTGCTGGGATGCGATGAACTGTCTTCGTCTGAACAGATTCTCGCAGAATTCAAAGTCCGAGCTCTAGAGTGTCATCCGGACAAGCATCCTGAAAACCCAAAAGCTGTGGAAAGCTTTCAAAAGCTGCAGGAAGCCAAGGAGACCCTGGCCAATGAAGACAGCAGAGCCCGTTACGACTACTGGCGGCGTAGCAGGATGAGCATCCGTTTCCGAGACTGGGAAGCCCTCAGCGACTCCGTGAAAACCTCCATGCACTGGGCCGTGAAGGCTAAGAAGGAGCCCATGCTAGAGGGACCAGAGGACAAACCCGGGGTCCCTCTGGTGGAGAGGGGTCCTCTGGTCGGGGAGGAGAGTGGGAGCAAGGCCTGGCAGGAGGGCCTGTCTCAGGACAAGGCCCTGAGGAATGAGGGGCCACAGTCGCCTGACACGCCAACATCCCCAAGTGAGAACTACTGGCATTTGCGTTTCCGCTGGTCAGCCGATACTCCATCTGATCTTCTGAGGAAATTCAGAAATTACGAGATCTGA

Function

GO: NA

KEGG:

id description
K09532 DNAJC12; DnaJ homolog subfamily C member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177329 lncRNA downstream 31369 12821902 ~ 12830926 (-) True G140971
TU177299 lncRNA downstream 122504 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 122504 12728274 ~ 12739791 (-) True AMCG00003138
TU177236 lncRNA downstream 256343 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 259264 12602822 ~ 12603031 (-) True G140904
TU177537 lncRNA upstream 537963 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 691195 13560519 ~ 13560839 (-) True G141175
TU177625 lncRNA upstream 896632 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 954090 13823414 ~ 13834549 (-) True G141219
TU177651 lncRNA upstream 973855 13843179 ~ 13843471 (-) True G141221
AMCG00003144 mRNA downstream 7804 12851030 ~ 12854491 (-) True AMCG00003144
AMCG00003142 mRNA downstream 13462 12823947 ~ 12848833 (-) True AMCG00003142
AMCG00003145 mRNA downstream 77009 12760842 ~ 12785286 (-) True AMCG00003145
AMCG00003132 mRNA downstream 105826 12747436 ~ 12756469 (-) True AMCG00003132
AMCG00003138 mRNA downstream 122488 12728238 ~ 12739807 (-) False AMCG00003138
AMCG00003146 mRNA upstream 9485 12878809 ~ 12899145 (-) True AMCG00003146
AMCG00003147 mRNA upstream 36216 12905540 ~ 12916369 (-) True AMCG00003147
AMCG00003148 mRNA upstream 50485 12919809 ~ 12971234 (-) True AMCG00003148
AMCG00003152 mRNA upstream 117026 12986350 ~ 12986772 (-) True AMCG00003152
AMCG00003153 mRNA upstream 143137 13012461 ~ 13012970 (-) True AMCG00003153
TU177331 other downstream 6954 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other downstream 6954 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other downstream 6954 12851021 ~ 12855341 (-) False AMCG00003144
TU177067 other downstream 1128533 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 1214676 11640816 ~ 11647619 (-) True G140758
TU177540 other upstream 557970 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other upstream 557970 13427294 ~ 13430324 (-) False AMCG00003164
TU178022 other upstream 1800148 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 2212331 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 3878737 16748061 ~ 16748431 (-) True G141826

Expression Profile