RNA id: TU177333


Basic Information

Item Value
RNA id TU177333
length 613
RNA type TUCP
GC content 0.43
exon number 5
gene id AMCG00003144
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12851021 ~ 12855341 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGTGTTCAACACCTCCACTCTTTTCCCGGTcctgcagcacagagcacaATAACGGCAAGGCAgTTTTGTTTGGTCTTGTCTTTTCGATTCCAGTGTGAAGATGGCTTTTAATGGCACCTGGGCAGAATACCGAAATGAAAACTTTAAAGAATTTTTGGAGGTGTTAGGAGTGGATGTAGCAAAACTgggagattttaaaaatttcAACCTGGAGCTCACGATGAAACAGGAGGGGGACCATTTCACCATGATCGAGAAGAGTGCTTTTCGAACCAAGGAGACCAGCTGGACGATGGGTCAAGAGTTCCAGGGCGATCTCGCTGATGGATCTGTGATGAAGGGTTTCTGATGGCAAGGAGATGGTGAACAGCAGAGAGGTGGATGGAGATGAGATGCTTCAGACAACCACATTTGATGGGGTGCAAATGAAAAGGTACTTCAAAAAAGAGAAATAGTTTTCCTGAACAAAATCCTGACTGGAACTGCTTCAGGTTGGATTCTGGAATCTGCTCTGCTGTTTCTTGGGTCACTGCATCCTAATGTCACTTTTAAAGGGAATATGTGTTTTGTGAAGATGAATAAAactttttcaaataatacaCGTTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177329 lncRNA downstream 20095 12821902 ~ 12830926 (-) True G140971
TU177299 lncRNA downstream 111230 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 111230 12728274 ~ 12739791 (-) True AMCG00003138
TU177236 lncRNA downstream 245069 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 247990 12602822 ~ 12603031 (-) True G140904
TU177537 lncRNA upstream 551946 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 705178 13560519 ~ 13560839 (-) True G141175
TU177625 lncRNA upstream 910615 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 968073 13823414 ~ 13834549 (-) True G141219
TU177651 lncRNA upstream 987838 13843179 ~ 13843471 (-) True G141221
AMCG00003142 mRNA downstream 2188 12823947 ~ 12848833 (-) True AMCG00003142
AMCG00003145 mRNA downstream 65735 12760842 ~ 12785286 (-) True AMCG00003145
AMCG00003132 mRNA downstream 94552 12747436 ~ 12756469 (-) True AMCG00003132
AMCG00003138 mRNA downstream 111214 12728238 ~ 12739807 (-) False AMCG00003138
AMCG00003137 mRNA downstream 129600 12717621 ~ 12721421 (-) True AMCG00003137
AMCG00003143 mRNA upstream 6954 12862295 ~ 12869324 (-) True AMCG00003143
AMCG00003146 mRNA upstream 23468 12878809 ~ 12899145 (-) True AMCG00003146
AMCG00003147 mRNA upstream 50199 12905540 ~ 12916369 (-) True AMCG00003147
AMCG00003148 mRNA upstream 64468 12919809 ~ 12971234 (-) True AMCG00003148
AMCG00003152 mRNA upstream 131009 12986350 ~ 12986772 (-) True AMCG00003152
TU177067 other downstream 1117259 11694006 ~ 11733762 (-) True G140757
TU177068 other downstream 1203402 11640816 ~ 11647619 (-) True G140758
TU176570 other downstream 2519649 10301800 ~ 10331372 (-) True AMCG00003049
TU176114 other downstream 3613291 9236658 ~ 9237730 (-) True G140015
TU176103 other downstream 4003181 8847032 ~ 8847840 (-) True G140006
TU177373 other upstream 6085 12861426 ~ 12879421 (-) True G141004
TU177540 other upstream 571953 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other upstream 571953 13427294 ~ 13430324 (-) False AMCG00003164
TU178022 other upstream 1814131 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 2226314 15081655 ~ 15117517 (-) False AMCG00003231

Expression Profile