RNA id: AMCG00003148


Basic Information

Item Value
RNA id AMCG00003148
length 705
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00003148
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12919809 ~ 12971234 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCTGGGCGTGCTGGGGGTGGGGGACGATGCCTGGGGAGGGGACTGGGGACGGATAGCAAAGGAGGAGTACAGAGGCGGAGGGGAGGAAACATATCCAGTGGGACTGGTGGGGGATTGCAGGACCCTGGTGGGAAACAGACGAGGGGAGGGCATACTGGGCCATGGCGTTGAGCATGGGGACGGGGGATTCGGTGGGGGAGAAACTGCGCACTGGAGAGAGGCTCTGAGCCACGATGAACTGCTTGGGTCGGGCATAGTTAAAGGCTTGCGGGAGGTTGGAGTTGCTTGCGGGGGCAGGCTGGTGGAGGGGCACGTGGAAGGCGGGGGGAGCGTGGTGCACCGGCTCCGGGGGTGCTCCCTCGTGCTGCTGTTCAAGAAGGACTTGGTAGTGGAGCAGCTGAAGCTGGACCTGGTCACTGTAATCAAACAAAGGAGCAAACACAAGGACTCTGAGGAGGAGGCACCTGAGCAAAAGGCCACAGAAAGTCACATCACAGAGGGGAAGATGGTTGTGGTTGATACAACATCCTGTGCCAGAGAGATCCAACTGCTGGACTGGTTTGAGATGCCTGATGAGTACCTGCTGGTCCTGGAGCAACCTGAGTCACGCAAGGACCTGTTCAGCTTTGCTCAGCACCAAAGAGGCCTGGAGGAGGCTGAGGCCAGGAGGTTCATACAGCAGCTGATTGCCAGGACCTGA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177329 lncRNA downstream 88883 12821902 ~ 12830926 (-) True G140971
TU177299 lncRNA downstream 180018 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 180018 12728274 ~ 12739791 (-) True AMCG00003138
TU177236 lncRNA downstream 313857 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 316778 12602822 ~ 12603031 (-) True G140904
TU177537 lncRNA upstream 436053 13407287 ~ 13408192 (-) False AMCG00003164
TU177584 lncRNA upstream 589285 13560519 ~ 13560839 (-) True G141175
TU177625 lncRNA upstream 794722 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 852180 13823414 ~ 13834549 (-) True G141219
TU177651 lncRNA upstream 871945 13843179 ~ 13843471 (-) True G141221
AMCG00003147 mRNA downstream 3440 12905540 ~ 12916369 (-) True AMCG00003147
AMCG00003146 mRNA downstream 20664 12878809 ~ 12899145 (-) True AMCG00003146
AMCG00003143 mRNA downstream 50485 12862295 ~ 12869324 (-) True AMCG00003143
AMCG00003144 mRNA downstream 65318 12851030 ~ 12854491 (-) True AMCG00003144
AMCG00003142 mRNA downstream 70976 12823947 ~ 12848833 (-) True AMCG00003142
AMCG00003152 mRNA upstream 15116 12986350 ~ 12986772 (-) True AMCG00003152
AMCG00003153 mRNA upstream 41227 13012461 ~ 13012970 (-) True AMCG00003153
AMCG00003159 mRNA upstream 76102 13047336 ~ 13105397 (-) True AMCG00003159
AMCG00003161 mRNA upstream 316990 13288224 ~ 13341765 (-) True AMCG00003161
AMCG00003165 mRNA upstream 425149 13396383 ~ 13405197 (-) True AMCG00003165
TU177373 other downstream 40388 12861426 ~ 12879421 (-) True G141004
TU177331 other downstream 64468 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other downstream 64468 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other downstream 64468 12851021 ~ 12855341 (-) False AMCG00003144
TU177067 other downstream 1186047 11694006 ~ 11733762 (-) True G140757
TU177540 other upstream 456060 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other upstream 456060 13427294 ~ 13430324 (-) False AMCG00003164
TU178022 other upstream 1698238 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 2110421 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 3776827 16748061 ~ 16748431 (-) True G141826

Expression Profile