RNA id: TU177434


Basic Information

Item Value
RNA id TU177434
length 2935
RNA type TUCP
GC content 0.43
exon number 3
gene id AMCG00003158
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13106456 ~ 13110634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTAGGAATGCTGCGGGAGAAAAGGTCGCTCTGGAGGCTGGTGTAAAGTGTACAGcaggtttatttgtatttatttattgcaacgTTGTCTGATTTGCCGGTGTGTGGTAGCCATGGCATACCAGGCGACCGGGCTGCACGCCAAAGTCAGCCGGCTCTTGAGTAAGGAGATGGGGAAGCCGGTTCTGAAGGCAAACAAGCCGCTAGCCTTGAAAAACGAGGTCGCCAACAGGAAGATGAAGAAGGGAGAGGCGAGCTGCATTACAGAGATGATGGCGGTGATGGCTTGCTGGAAGCAGAATGACTTTAAGGACACTCCCTGCTCCAAAGAGGTGCAGACCTTCTACCGGTGCACAGCCAAAGCACAGGCCGAATTGAAAGCTCAACAGGGACAGCACAGGAAGGGCCAGGGAGAGCGCCTCCCGCCGAGAGAAGCCAACACCCTTCTGAGACGACATCCCAATCTCTATAACGAGATATAGGGCCAGGGAACTAGGCCCAGGCAGTGGTAGCAAAGTCACGTTGCCATAAAGGGTCTGGCAGGTGAGGTGATACTAAAAGAGACAGTCACCTACAGGGCAGTACAAAGACTGTGTAAGCCCCCCCCGGACTTGCTTTCGCCCAGGAGATTTCATTACTGTGTACAGCTGTATTTCATATTGGGGGACTCAATGTTTCATGGTTTCAATGAAGAACAAAAGCAGTAGAGGCTGGGCAAGTTCCCGGACATCTTTGTATGTTCACTGAGATTTTGCCAATGAATGCAGAGCAATTCCCAAAACATATCCAAAAATTGTTTTTGGATTGAACAGTGGTGTACAGTAAATGAATCATGCAGTTAAACATCTTGTATGGAACACCCTGAAAggcttttctgtctttttttttttttgatgatcTGCCCTGGATTGTTTTGTATGCCCTCGGGTATTTAATTTCTGGCTCAAGAAGAGTCATAAAGTCAaaagcacagatttattttctataggAATGTGCTGCAGGCGAATTCGTTGCCTCTTGTGCTGAGCTCTTGCCTTTTTTGAATACAGcctccatttgttttattctagtCAGAGTCTTATCAAGTCAATCATAGTGCAGTGTGTTGGTGTTGAAGTAAACTATACTGGAAGATACACCATCAGTTCCACAGCAAGATGGTAGAAGACCAAAATAGCGTTAGATGACATGCAGAATCACGGCACTAGACTGAGACGAGCCTAACGTTTCACCACAGTCCCGGCTACATGACTGAGATGATCACGAAATAAAAGAACAATTAaactacataaaaaaattaaagtccTAAGGGGTTAAGTCCTAGCAGGCAGGAAGAGCAAGGAATCTATTTCAGCAATGCAGACGCTATTAATCAGATCAACATAAAGCGCTGCcagtttttttaatgctgctgCAGAGTAAATGGGCTGGATTTACAGCGCTGCAAATTCACTCTTGATGATTATTTCTCTAATTAAGTATACTGTTACAGCATTGAAAAGGTCATCACATTACAGTATCATGTAGAGCCATTTATTAACGATTTCAGACGTACAAAAGCTTTTCTCTTCATAAAACTCAACTGAGGACCAGTCGATTTGCTTGAGCCGGATTTGCCTAAGATAACTAATTAAAagcaagtgtattttttttgctgttaaataaaatgttcgCAGGGCTGTATAAACATTTTATCCCATCTCCTGGAGCAAGCATAGTAGGTGTTATTCTTTCTCATGCATgattaactttatttaaaactacTCATACATTACAGATTACAATTTGCTTTGCAATGTTATAGCTGAGACTACTAGGACTCCAAAGTACaagaacacacacagagcttTGCCAGATTGAAATAAGCAGTCTTGAAATAGTATGTATGTTACCCAACATCACAGAGAAGCTAAAGCTAAAGGTGACGGGCAGTTTTAACCGAGAGATTGTGCTGAACAATGCCCACTTCAAAAACGTTCAAATGCTACAGTAGACACTTCTAACTTTCTCTCGACGACATATGGTGTGTACAGATTTAGTTCTTGTGCTATAACTGGATCTGTTAATTCATCCATCACTGAAAACGAAAAGTGCACACTTGGATAGTTTCTCTTTTTACCTGCCTCATGTATTTTCCCCCCCTCTGCCCTGAACCTGTCATTACAAGATGAAATCCAGCTCTGATTGATGTCCTAAGGGTGCTGACTGATTGTGTGTTGTCTCCAGATGTGAACAGTCAACCCCATGACAAGGATGGAATACACACTCACTGTAGAGCGTTTGATCCATTTCAGGTTGACGCTCTGGGCTCTTGGAACAATTTGAGTTGATCAAGCAGAAAAGCATATtatgataattttttttaattccatacACCTGTCTAAATCTAAAACTGCAAGAAGGCAGAATTATTCAGTACCTAAAATTGACTTATATATATAAGGCCGTAGTGGGCGTAACCTGGAGTGGCTCAGCCTGCTGTACAAGGGGGGGTCTTGCTCACATCCATGCCCAATGTTCTGGAGAGTTCATGAATGCCCCCTCACCCCGTTCACACACGTGGACTGAATCACATAGAAACACATAACCAGTGTGCTGTCTTCTGTACTATACCCCCCAACCCCGTCCTTCTGATCAAATCTGCTTCCTCTGCTCGCCCTCAAAGCACTCTGACTGTCCACTGCGCACCGTGTGAAATGTGATTGTTATAGAATCAATCTGATAACAAAGAAGATGCTTTCCAAAAGAGGCTTTGTTTGATTGCTTCATTGCTTTATTGGATTACCTGCcaggaaaacaaatccatccTGATGGCTATTCTGATTACAGTGAAAGTATAAAAGTTGAAATCGCTCTCCAGTATTTTACTACAGTACCTTGTCACTATTGTCATTCTGATGTTtgcgtgtttgtttttactaaacCTTTACTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177316 lncRNA upstream 275350 12821875 ~ 12831106 (+) False G140961
TU177315 lncRNA upstream 281826 12821875 ~ 12824630 (+) True G140961
TU177211 lncRNA upstream 721386 12384676 ~ 12385070 (+) False AMCG00003129
TU177208 lncRNA upstream 732625 12371999 ~ 12373831 (+) False AMCG00003129
TU177201 lncRNA upstream 820180 12286047 ~ 12286276 (+) True G140872
TU177437 lncRNA downstream 1103 13111737 ~ 13111936 (+) True G141066
TU177565 lncRNA downstream 449964 13560598 ~ 13560839 (+) True G141156
TU177596 lncRNA downstream 614276 13724910 ~ 13735516 (+) False AMCG00003168
TU177650 lncRNA downstream 732545 13843179 ~ 13843515 (+) True G141220
TU177652 lncRNA downstream 734112 13844746 ~ 13844952 (+) True G141222
AMCG00003157 mRNA upstream 49467 13029086 ~ 13056989 (+) True AMCG00003157
AMCG00003156 mRNA upstream 86979 13006812 ~ 13019477 (+) True AMCG00003156
AMCG00003151 mRNA upstream 105851 13000165 ~ 13000605 (+) True AMCG00003151
AMCG00003149 mRNA upstream 124388 12970705 ~ 12982068 (+) True AMCG00003149
AMCG00003150 mRNA upstream 157879 12945804 ~ 12948577 (+) True AMCG00003150
AMCG00003155 mRNA downstream 5564 13116198 ~ 13135069 (+) True AMCG00003155
AMCG00003154 mRNA downstream 29948 13140582 ~ 13167943 (+) True AMCG00003154
AMCG00003160 mRNA downstream 113694 13224328 ~ 13269167 (+) True AMCG00003160
AMCG00003162 mRNA downstream 322680 13433314 ~ 13454377 (+) True AMCG00003162
AMCG00003163 mRNA downstream 346301 13456935 ~ 13467244 (+) True AMCG00003163
TU177338 other upstream 223458 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 366689 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 732096 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 1618572 11486191 ~ 11487884 (+) True G140693
TU176867 other upstream 1894345 11209573 ~ 11212111 (+) True G140613
TU177775 other downstream 1070146 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 1177173 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 1490683 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 3443377 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 4565645 17676279 ~ 17678522 (+) True G141962

Expression Profile