RNA id: TU177537


Basic Information

Item Value
RNA id TU177537
length 906
lncRNA type sense_over
GC content 0.39
exon number 1
gene id AMCG00003164
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13407272 ~ 13430324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCTGCCTGTCTCTGCTTCATGTTTTGCTGTGGAGGTTCGCAACCGAACTTCATTAACCTTGGGTTCGAAGGGATGTCTTGCTGTCTCACGTCCTTGATTTGTCAGTGagaacatatattttttgtctcttGCTTTCACCTGTCCTGCTGCCCCTTCGCCCGACACCATCTACAGGTGTGAAACTCCCAATTACCACGTGTCTGCGGTTGGAATAACTTGCTGACATCTATACACgttgtatatacacacagtgctGAGGAAGTCCATTTTGGCGTCGAATCCCCTGCGGTTTGGAAAATTGCCACCCAACACcgttaagatttatttttaaccacatGCTCATACCTGCTAGTTAATTCTCCAGGCAATCAAGGCAGGTTCTGAGTTTTGTCCCACTGTAACTAAGGGTAAGGCagtaatgaaaataagaaaataagcagAATGactcaattaaaataactgctttgcataaaaaaaattTTTAGCCACGTCACAAACATTTAGTTGCATAAATGTAACCAACTCACTCTTGTTACCAGAGATGTAATCCAGGTTTCATTAGAGGCATGTTTAAAGAATCGCTACCCCTACTGAGTGAAAACTCATCTATAACCTGTTACATGTGTATAACTACccaacactgtgtgtgtatctctgtagATTGTGTGTGTTATCTAACCTTCCCATTCTTCATGAGAAGGAGACCAATATTAAAACATGCTCCCTCTTCATCACTGATTACTACTTGTCGGTCTGGTCTTAACTGCGCTTCTATTTTAAATGAGAGTTGAAAAGAAAGTGTGATGAATTTTACAAGCCTTTTCctctgttttgatttatttattctttcttttctttttttcttggttGTGTAActttttaatatgcaaaataaaacaatcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177329 lncRNA downstream 576361 12821902 ~ 12830926 (-) True G140971
TU177299 lncRNA downstream 667496 12728274 ~ 12739791 (-) False AMCG00003138
TU177301 lncRNA downstream 667496 12728274 ~ 12739791 (-) True AMCG00003138
TU177236 lncRNA downstream 801335 12605752 ~ 12605952 (-) True G140906
TU177234 lncRNA downstream 804256 12602822 ~ 12603031 (-) True G140904
TU177584 lncRNA upstream 152327 13560519 ~ 13560839 (-) True G141175
TU177625 lncRNA upstream 357764 13765956 ~ 13836294 (-) True G141201
TU177647 lncRNA upstream 415222 13823414 ~ 13834549 (-) True G141219
TU177651 lncRNA upstream 434987 13843179 ~ 13843471 (-) True G141221
TU177655 lncRNA upstream 437758 13845950 ~ 13846159 (-) True G141225
AMCG00003165 mRNA downstream 2090 13396383 ~ 13405197 (-) True AMCG00003165
AMCG00003161 mRNA downstream 65522 13288224 ~ 13341765 (-) True AMCG00003161
AMCG00003159 mRNA downstream 301890 13047336 ~ 13105397 (-) True AMCG00003159
AMCG00003153 mRNA downstream 394317 13012461 ~ 13012970 (-) True AMCG00003153
AMCG00003152 mRNA downstream 420515 12986350 ~ 12986772 (-) True AMCG00003152
AMCG00003173 mRNA upstream 388883 13797075 ~ 13811136 (-) True AMCG00003173
AMCG00003174 mRNA upstream 440318 13848510 ~ 13871340 (-) True AMCG00003174
AMCG00003177 mRNA upstream 534122 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003180 mRNA upstream 556689 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003181 mRNA upstream 646709 14054901 ~ 14061129 (-) True AMCG00003181
TU177373 other downstream 527866 12861426 ~ 12879421 (-) True G141004
TU177331 other downstream 551946 12851021 ~ 12855341 (-) False AMCG00003144
TU177332 other downstream 551946 12851021 ~ 12855341 (-) False AMCG00003144
TU177333 other downstream 551946 12851021 ~ 12855341 (-) False AMCG00003144
TU177067 other downstream 1673525 11694006 ~ 11733762 (-) True G140757
TU177540 other upstream 19102 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other upstream 19102 13427294 ~ 13430324 (-) False AMCG00003164
TU178022 other upstream 1261280 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 1673463 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 3339869 16748061 ~ 16748431 (-) True G141826

Expression Profile