RNA id: AMCG00003168


Basic Information

Item Value
RNA id AMCG00003168
length 6677
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00003168
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13724910 ~ 13743543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACAGTGTAAATAGCTCAGTCAAGCCCACCACTGCGCTGGAGGCTCTGCCAATCACTCCCGTCTTCCGCACCGGAGCTCTGCCCCAGCGAGTTGCCACCACCCCCTCCCTGCCCTCGGGGAAACCCAAACACCTGAGGTACACAGACGGACTAACCCCAGTGCGGCCAGCAGACCCTTACACTCAGCCCATGGGCCTACAACAGAGCTCCATTGAGATCCCAGTGGCCCCGCCGAAGCCCAGGcCCCGGCCCCTGCCCCGGCCCCCGCAGCCCCCAGCTCTTCCAGCCGCCCCCCCTGGGTCACAGACGATTCTTTTGCTCAAAAGCAAGAGCACCTCCACTGTCACCAAACACATCCACCCACTGCCCCAAGCTGCGCCCCCAGCCCCTGCCTACATCCCCAACCCTGTCCAGGCTCCCCCTCCGGCTCCCATGCCCACCTACAACCTCACACCTTCCCCCTTCGTCGCCCCCGCCGCCCCCACGGCTGCCCGTGGCGTGGCCCAGAGAGCCGAGAGGTTCCCCGCTGGCAGCCGGACGCCTCTCTGTGGAGCCTGCAACAGCATCATCAGGGGGCCCTTCCTGGTGGCGCTGGGGCGATCCTGGCACCCGGAGGAGTTCAACTGCCATTACTGCCACAACTCGCTGGCAGACGTGTGCTTCGTGGAGGAGCAGAACAACGTGTACTGCGAGGGCTGCTACGGAGAGTTCTTCGCCCCCACCTGTGCCCGCTGTAACACTAAGATCATGGGGGAAGTGATGCACGCACTGCGACAGACCTGGCACACTACCTGCTTCGTCACCAAGTGCCACGGCTGTGACTTCCCTGTGGAGGCTGGAGACAAGTTCATCGAGGCTCTGGGCCACACCTGGCATGACACCTGCTTTGTCTGCGCGgtgtGCCACGTGAATCTGGAAGGCCAGCCGTTCTACTCCAAGAAGGACAAGCCCCTGTGCAAGAAGCACGCCCACGCCATCAACGTTTAGGCGGCCGTGCCCAGCAGCGCCAGGGCAGGGCAGTGCTCTCGCAGCCGGGCGCTTCTTGAGAGAGGTCTGGGGAGCTGTCAAGGCCGGACAGTGCTTCACTTCCCAGAATTAAcgataaaacacaacacaaacaaaacaagaaacaaccTCATCTAATGATCACATGGGAGAAAAACTATCATTATTTTCAAGGCCTGATTCCATTGATGTTAGAGCATGTTGAATAACCATCTGTTTGCTCTACTATTCTAAATactattgatttatgtatttttcattgacaCTGAAGTCCTAGAAGTACTCAACGTTAAGCTCTGGTGCTGACCAAGATATTGTGGAGCCTAAGTAccattacattatatacatcCCCCTTTCCCCCCCAGACATTTCCCAGTGACCATAAATATGAAGAATTTCAGTAGATAAACATTTACAATGCCTTTTTACATAAACTACAGTGGCAGACGTTTTTACCCAAAATGACTTCTGACAATAACTCTGTTAAAGAACATGAAAAAGGCATTTTGGTTCATGAATTAAAGAGGGAATTGATGGGGGAAAAAGGACACTATTAAAACCCCAGAATATCTTGGTCAGCAGCTGATAACAAATCTTTGGTAAAACAGAAATCTTGCCTTGCGATTTTCCTAAAGGTCATTTCTTTAAAGTTGTACGAAACAAGAAGTGTCCTTTATCTGTTGAGGGAACTGTGACTTTTCTCTGTCAACTGGTTCTTGACACAGATAGATGTTTTGTGCATgtggatagatagataaaaacCTAGTCAGATAAATAGCATTAGCGTGGAAGATAAATAATATCATAGTTTTGTATTTACTGGTACATCTTAGTTAAATATTCTCTGCAATGGTTTGCCACAGCACTAGTTACATCAGCAGATCTTCATGGTACTCCACAAagctatttaaataatatattgaatgaGAAATGGACTAATATATTGACTGATTatgctgtatttattgaatttaaaaagcGACACAAATGGTACGTTAGGAAGGATTTGTTTTAGAAACACATAGGAATCCGAAGTAGACGGAAGTATAGATAGGTAGCTCGCCCATCCGTACTTTAAACTTCTACTCTGAAAGTAGTTGGAAGTTCTGTCGTGtctaatttgtgtttatttattagggGGGTTGCGTTTTACAGCAGCACAAACGctttggaaatgctgctttttACATAGTGAGCTCTCGAAATTACTGAAAGGTAAACAAGAGGTCGCGGAGAGCAGAGTTTTAGAAAGTAATTTTTAACTCACTGAAGCGATAGAGGGGCTGGGATGTAGTGGGGAGGGGTGTCAGGTAGGGATGAGGTTGTGCTTAGTTGAGTGTTTCAAAGCCAGAAAGGGGCTGATATATCAAGCAAGGGACCTAATTCTAAAAGGGCTTAAGACacacattgttgtttttagtttttttcttcttttaagtACATTTGTGAGGATGGTCttgtgaaaaaacacattagtaATCTGCTGGAATCGTTCCAAGCGTTGGGGGTCTCTCCCCAGGTCGAGTCATTCTGCAGGGGTGTCTAGGGCCCCACTTTCCTGGGAGAGAAGAACTCCAGCCCGTTTTTTTTGGAGCATGCACTGAAACCCGCGGGACTTCACACATATCTGGTATATCCATTTCAGAACTACCGCTGGGCAGCTTGACTCGGTCGTACGGGCtggtttgtttgcttctgtgtttgttcGTGCTTTGTAAGATTCGATTTAGTTGATCTGAAATGAATGAGCCACCTCTGACTCCCCCTGAGCCGAGAACAAGGGAATCGAAACATAAAGTATATCTATAGAACGTTATTAGAACCATAACTTGTAGTCAATAACTCCACCGGCACAACAGCTGGTCTGGAAGTTGCCCCAGACCGAGAGAGATAGTGGGCGACCTCTGACTCTGACCGTAGGGTTGTGCCATTCTCCCTTATGGAATCAGGTGCCGGCATTATCTGCACTGCAGTGCTTAGTGCAGAAGAGTGCCAGAGCATCCTAAACAACTCTTTTCTGTTGACAATTTTGTGTATTATCTGGAGCCCTAAACAGGCCCAGTATTATCCATACCATGATGTAGCCTTCAGCTCCTAGAAGCAGTGCTGTACTAACGCTGGACTGACTGCTGTGAGCGCAATATGCTGagtgttctttatttatttaatatatgtgtgtgtgtgtttgtgtgtgtgtatatatatatatatatatatataactttatgTTTTGCCTGTTCGTTGAATATGGCTAGTTTGTAATATTTGGGGGTAAGTTACATAggaattttttaattaagaaaacaatttaggaaaaaaaaaaaaaagatatatataaaaatacatttcagagaaaGACAAACACTGGGTAAGAAATGACCAAACAGGTTTGCAAGATTATACCTTTGATTTTGCTTCTGTTAGGAACTATCCAGGCTGTGcataaaaatgtacttaatcTCTCCTTTCGGGAATGCGTTACAAGAGCACCAAAGCTGTCACGGGTTTCTTTTTTGGAAGAAATCGCTCCAGcgtgtgtgttcatttatttaaatccttAAATGCTTGAATGATGGCAAGCAGCTTTCTCTCACATTGGTGGTTCTGCTTTCAAAAATCTGcagtttcattttgaattgTGACAGTTctcttattttaaacaaaaaatatatactaatgGGAAAAGCAGATGCGATATACTTTATCACCACTAGGTAGCAGCACAGGACTAGTTCTGACACTGTGGGTGTGTCAAAGAAAAACCTGGCATAAATCTTTATAAACTATTGTCTAACCTAAgcatatatataaagatttacAAGGTGCTTAGAAatccatcttttaaaatgtgggCTTAAAATTACTCATTACATCCCTTTGACTCTAATACCCTAAATAATAagtcataataaatacacaaactttAATAATGTACAGTGAAAAATTAGTTTATCGCTACAGAACTATACATCTCCAATCcctgtatattaaaatactatattttcATAGTTTACACTCCTAAGACTAGAAATGtgtgaaacactgaaaatgttactttttatttttaggtttggTTTTGAACTGGATGGCTACTGCTCGGGGGTGCTCCAGCGCTTGTGCTTTGTAAACACTTTGAAATACAGTGAAGGTAGTATTGGCTGATATTTTAAGATGCAAAGCACCCTATTTGGTTCTGTCGTTCTAGTTTAAACTCAGTTTGTCTGCTGTGTGGCTCTTGACAGCTGGAGGACCATGTCCCCTTCACCCAGTGTCCAATGCTCAGTTCATTTTAAAGGTGACAGCCGAGTTGTTGAGATTAGACCGTGTTTTCCAAAGGCGCAGCAGCACTTTCGGGCTGCAGTCGAGCTTGTGCAGCCACTGAGGTTAGTGCGCAAGGTTTATGCTGCGTCAGAGTGTGAGATACAGCGTCCTTGTGTTGACCCATAGTGATGCACATTTGTTGAAAGATTCAGTGAGCACAGACTCGGGCATAGGGAGAGTGGTGTGGTTGAAGCGTAGGGGTCTGAAATTCCTTCAttgctttcttctctctctttctctctccatccttggcttcttttttgtgttttttcatttttttttgcaaattttTCATTTACACCCCCTATTTACCATTCATCTCTTCTTCATTGGTCCTTCTTCCATTTACTCATTTATCAATTCTTTACATTTGATTGGTCCTCTTCTCTTCTCCACTTCTCTCTGCTGTCTCCCTTTGTCGTTTTCTTTGTCTCTTTCCAATCACCCCCCTCTccttgctctctgtctctcggcAAGTCTCTCTTCAGTCCATGTCTTTTCTTCTTGTCgttcccatctctctctcgtTCCTCTCCTCAACTGGTGAGTCTGTACAGTTGCCATTGGTTCTCCTAATTTCCCGATAATGTCTGTGAGGCAGAGTTAGTTGCTTATATCCTTTTCCTCCTAAATTCTTGATTGGGACTTTTGTCGTTGAATTATTTTTCACACGAAAGGTCTCAGATTGATGTGCGGTCCTTCAGTTGTCCATTTACACTGCTGTATATTAAACGTGTTTCTTACAGAATGCACACTGCTTTAGGTAGCACGGTAGTTAGGGAGAAAACTATCGATAGTGTTTTTCTGGCATGCGGTGATTGACATTCTCTtaagtttttctctttttctgttattttattctcgtttgttttgtaaacaccGTGAGATGTTACCAAAATGTGGCCTTGGACATGTGATTAGTTGTTTTTccttgataacatttttaaatgtttttatttctttttcttttcatttttgttttggcatGGGCTGTTTTTAACCGGTTAGGAAAGTGTTAATTCATATTGTTCTCATTAGCGATATTTAAATTACTATGCATGTTCAATGCAAAAGCGGGTGCTCTGTTTCTTTACTGAGGACAAGGGCTTTGGCTATGGAATTGTCACATATCACtggaatacaaaacatatttatgtatgtctATGCAGAGGGAGCcctgctgttttaaaatgagcagAACTGACACAACACCCGGCATAAAAAGGAGCAGGCCCAAACCCAGCACTACGTGGTAAATTGACCTGACTAGATAAGCTAAAATTTGGGCAACCCCCTGATGGGTTTTGAACTCCGAATGAGAGAAGAACAAATGCACggaatacatttgaacaattaCACAATTCATTCTCTTCCTTggtgtatatattaaaaggtAGATTTGAGAAAACCTTCAGTAGCAGTTGTCTAGTACTGGGAATATAGAAATAGACTATATCCCTCCTAGGAGCAAGGAGTAAGGAGTGGCAGGGAAAAGCTATTTGATGGACTTCCTTCTTCTTTTATCagtcttctttcttttctatagCTCTGTTCTCCCTCCTTTTTACCTGCATGTTCTGTTTCCATTCCCCATCCTTTGTGTATATTATGGTAATTTTCCTTTACtcattgttattgttctttCCTTGGATCCGCttcttcattttcacatttgtccTACAGtggtttattgtgtttattcttaAAGTCATCTGTCCAGATTGAACGTTTCTCAAGGTATTGAGAAACGGCTTCATCTGTACAGACAATTTCCCACCTCTCACCTATTACATTATACACAGCATCTGCAATTTCCCTATGTAACAACCATACATCTGTCAATGCTGCTTGCACTCTCACTAGGGgcaagaaacaaaatcaaccTGAATGCTTGAATGAACTAGATGTTAGACTACAATGTAATTAAGTTAGCATGGTCACACTTTCAGCAGAGTTTACTTATCCAAAATAGTGTTCCTGCGctgctgcattaaaaaaaggccttaaataaataaaaactatgcatGTTGTTCAAGACAAAAATGACCTTAATGTAGATTCACTCAGAAAGAGGTAGAAATTACTCATTTTCACCCTGTATTAAAAAACTACacaacttttgtttgtttcaatgtatACAAATGATGATATGACAACAAAATTGTAACATTTCTTTGCAATTGTTTTGGTCAGTGACTTTGGAAGGGCTATCCCATTGTTATCATGCTTTGTCATTAAGCATTGTTCCTCACTGTGCAACACTGGAAGCTCCTATATTTAATCTGTGCATGTAACCTTCAGAGTGCATGGATGGATGTGATTTGacttcagcaaaaaaagaaaaagaaaca

Function

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177565 lncRNA upstream 170992 13560598 ~ 13560839 (+) True G141156
TU177437 lncRNA upstream 619895 13111737 ~ 13111936 (+) True G141066
TU177316 lncRNA upstream 900725 12821875 ~ 12831106 (+) False G140961
TU177315 lncRNA upstream 907201 12821875 ~ 12824630 (+) True G140961
TU177211 lncRNA upstream 1346761 12384676 ~ 12385070 (+) False AMCG00003129
TU177650 lncRNA downstream 99636 13843179 ~ 13843515 (+) True G141220
TU177652 lncRNA downstream 101203 13844746 ~ 13844952 (+) True G141222
TU177654 lncRNA downstream 102407 13845950 ~ 13846154 (+) True G141224
TU177656 lncRNA downstream 103787 13847330 ~ 13849411 (+) True G141226
TU177670 lncRNA downstream 158232 13901775 ~ 13907086 (+) True G141238
AMCG00003170 mRNA upstream 10272 13704830 ~ 13721559 (+) True AMCG00003170
AMCG00003169 mRNA upstream 82071 13633428 ~ 13649760 (+) True AMCG00003169
AMCG00003166 mRNA upstream 174584 13519114 ~ 13557247 (+) True AMCG00003166
AMCG00003167 mRNA upstream 218582 13489808 ~ 13513249 (+) True AMCG00003167
AMCG00003163 mRNA upstream 264587 13456935 ~ 13467244 (+) True AMCG00003163
AMCG00003171 mRNA downstream 36613 13780156 ~ 13793709 (+) True AMCG00003171
AMCG00003172 mRNA downstream 80347 13823890 ~ 13835041 (+) True AMCG00003172
AMCG00003175 mRNA downstream 146387 13889930 ~ 13895822 (+) True AMCG00003175
AMCG00003176 mRNA downstream 171562 13915105 ~ 13937723 (+) True AMCG00003176
AMCG00003178 mRNA downstream 276802 14020345 ~ 14028256 (+) True AMCG00003178
TU177434 other upstream 621197 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 848833 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 992064 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 1357471 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 2243947 11486191 ~ 11487884 (+) True G140693
TU177775 other downstream 437237 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 544264 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 857774 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 2810468 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3932736 17676279 ~ 17678522 (+) True G141962

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011744 True 4619 mRNA 0.41 12 NC_007124.7 22480857 ~ 22552687 (+)