RNA id: TU177596


Basic Information

Item Value
RNA id TU177596
length 3575
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00003168
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13724910 ~ 13743543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgcAAAGGTGCATGGGACAGGGGAGAGTGTGGCGTAACGGGTTTCCTGCACACACTGAGCTGTACTAATCCCATTGCCTAGTGGGAGAAGACAATTTCCCTATGTTGACAAACGTGCCAAGCAGAATTTGCCATTAGGAGGCGCTGTAGGTCTCAGCTAAGCCTTGCCATGGGCTGTGAGTCCCCCGTATTCCTGAActcccctctccccttcctccctccctccctcacccccACACAAACTTTCCCTTCTGCAGTggctgagaaagagagatatgGCTTCTTCTAAGTATGTGTctcttgaaaaatacaaaatctaaatcctgaaggaaatatatatgtatgtatatatatttaaaatcctttttaaGACTCATTGAAAATGGATGACCAATAATCGTAAAAGCATGTGGATCAATGCAATCCTTTAACCTCTTACTCCTTTCTATGTCAGATGCTGTATTTTTCCTTCTTACTCtcttctctcactttctctctttctctctactTTCCTGGTTTTGCTTGAAGTGAGCAGTAAtggtttgctttcaaaacacaacacagccctTATACAGAAGTAGAATGAACTGAGATGTAGTATATAACCTACCCAATATATGTTTCTATTACTTGTCATTCCTATAATTCTCTATTTAGAGGATAAAAAACTACAATTAAATAGTGATAGGATGCTGTTTTTGTACTTTGGTAGATTCTCTTCCTGATATACAACACTTAGTAATTGCCTCTCAATATTTCCaaacacatatttttgtaattgatgccaAGGAGGATTATGTTCACATCCAATGGAGTGCTGTTGCAGAGCATTGACACTTTTTATCGGGTTAATAAAGGTCAGTCAGGTGCAATCAATTGGAAAAGAGCACGGGTTGTGTTTTGAACGATGACTGCTTCTGGCCAATGGTCAATTTCGATGTATTCGTTTTGCTTTGTTCATTCGTCCATTGTTGGTGTTGGTCTGTGTCTATCTGTGTATGTTAGCTTGAATAAGTAAGTGTTTGTGTGGGAGTATATGTGGAGTAGGGTTTCAGGTTAGATTTCAATTGTTAAGGATAATTTGACATCTACAGCTGTCAAAACAGTTCAAACATGGCCTAGTGGTAGTTGTATATTCTACTTAGGAAAGCAGTCAGATAACATTGCCAAATCAGGGCTGATAAGTATTAGCCACAAAGTAGAACTATTTAGAACTGTTGAGCTGCTTTAGAGACCTCCAGAGACCAAAGCACAGATAGGTAGATAGTTTCCCGTTCAAATCAAAGCTAAAAAACAGGTATCTGAAAGTCAAATTTCTTATCCATCTATTATGGTTACACTGTGAGAGGTGAATGTGTGAATGCGTATGTGTTTCATTGATTAAAGCTGCCTCATAGTCCCTACTATGACACAAGAAAGGGTTTTAAAGTTTATAATTGTATTCTGAAAGGTTACAAGGGCAATGGGGCTACGAGGCTTTGTGGCAGATGTACTGTTGGTGTATGTTTGTCCCTCTCACTCTcgctctccatctctctctctgcgtgtgTGTCTTCTGTCTGTTGTTCTTTATTTACTCACGTTCTCTCTGTGCTTCCTCCTGCCTCccctgccaacacacacacacacacagccctacCCGTAGTGAAACCCAAACCAGCAGAGCACACACTAACCACACCAGTCTGACACTGAAAGAAATGGAGGGGTGGATGGCCAGGTGACTTCAATTCCAGAGTGCCTTCTTAACAGGCCACAGAGAACCAGGTTTCATTCTGTGCACACGTCAAGCAAATAATGTTTGTGTGACTGTGGATGTTATAGAAGTACCTGAAAAAGATAACAACAAAATTAAGTTGAGCGCTGCCCCTGTTTGTGGCCTCAGATACATAGCACTTCACTAAGGAGCTGGATAATCAAACCACTTGtttcatttgtatgtattaaattatttggGCTTTCTGTGTGGTAAATGGCACAGAAATACATCTCAAAGAATCTGATGTAAATGGTTATGAGAGAGCATTTGGAGTGGAGTCTCTGGCCGGTGAGAGGGTCAGCCAATTGTGTCCACTAGGCCTGTTGCTGCTAGGTGCCTGTCCTCCCCTTGTCTCTTTGCCTGGGCTGCTCCTGTGGGCATTGCATACATTCCGGTTTCTGgacaagaagaaaaaggaaagccCTGTTGTTAGAGTCCAAACTAATAAAGCCATTTCCTCTTCTGCTCATGTGACTTCTCGACCCCAGAAATGCCCTATAGGTTTGCTTTTGATGTAGATTTCCTGAATGCATGCATTCCCAGTCAATATTCTCTGACATACCTTTCTGTGTTTCCAGGTCTTTTTTATGTTGGTTCTTGGTATACACTGTTGAATTTTCTCCACAGCAGGAACACATGTTTGCAGAACCGTTGCCCAATACCTACTCTTCCCAGATAcagaatttattattattattttcccatttgGTTAGGAAAGGATAAGGGATCtatgtgttaaaatgtactAGTGGCCAAAAATGACCTTTAACCGTTTGAGCCCCATGCAGTGGAGGCTCTCCGTGCATTTTTGCGGCCCTGCTCTCACTGCTAAAGAAGCTCCCGGAGGTGATCTTTGGAAAGCCCAGCTCCCGTCCCCCAGGATATAGTAACGCTGACCTGCTACAGGGTGATGATTTTCCACATATTCTGCATCCTGTTCTGTTCTCTTTGAAGACTTTTGAGTCCAGCATTTTGTGGACTGTTTCTCATTTTCctatcccccacccccaagaTTAAATTAACATCAACCATAGTATGCGCAGTCCCTTAATAAcatacagcacacagacagactccaTTCTCAGGAAAGagtttacaatcaagaggagaGAGTGTGGGGCGAGGCCATGTGTCCAGGCCTGTTCCTGGAACCGCAGTCACTGCTTTGCCAGGATCAATAAACAATCTGAAGAGAGGTCCAGTATGTAGTTCACATTCTTAAACTTTGTAAATTCCCCCCAAGTTACAGTTGGGAATTGTGTGCAAAACTCATTCCTGAATTCCCAGAATCCGGTCCCACCAAAAGCATTACCAGAAGGAGAATTGACACGGAAGAAATGACTCCCTCCTGTTATTCTCTCCAATCCCTTCTTAATGAAGATCCCTGCATTGGGTTGCGTAATCAATACTGAATGCCTGTTGCATGAGAGTCCTGTGCAGAGAATgatctttgaaaatgttttgtggatGACTGActtaacacaaatatatatacacactgtatgAACGTATATATATACCTGCCTTCAGATGTTGACACGTCTTTCTCATTGCAATGTAACCTCTCGTCCAGTACTCCTATTGAGCATGCTCCAGTGTCCACCAGCCCCGTGCCTGCTTCTCTGCCTGCCGCTTCGCCCAATCAGCCAGCTTCTGCGCCCCTGAGCCCGGCCAATCAGCTCTCGCCATCGCCTCCCGCTGTCTCTACTCCAGTAGCGCCCACCCCAAAGAGCCCTTACACTCAGCCCATGGGCCTACAACAGAGCTCCATTGAGATCCCAGTGGCCCCGCCGAAGCCCAGGGTCATCAGCANNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177565 lncRNA upstream 164071 13560598 ~ 13560839 (+) True G141156
TU177437 lncRNA upstream 612974 13111737 ~ 13111936 (+) True G141066
TU177316 lncRNA upstream 893804 12821875 ~ 12831106 (+) False G140961
TU177315 lncRNA upstream 900280 12821875 ~ 12824630 (+) True G140961
TU177211 lncRNA upstream 1339840 12384676 ~ 12385070 (+) False AMCG00003129
TU177650 lncRNA downstream 107663 13843179 ~ 13843515 (+) True G141220
TU177652 lncRNA downstream 109230 13844746 ~ 13844952 (+) True G141222
TU177654 lncRNA downstream 110434 13845950 ~ 13846154 (+) True G141224
TU177656 lncRNA downstream 111814 13847330 ~ 13849411 (+) True G141226
TU177670 lncRNA downstream 166259 13901775 ~ 13907086 (+) True G141238
AMCG00003170 mRNA upstream 3351 13704830 ~ 13721559 (+) True AMCG00003170
AMCG00003169 mRNA upstream 75150 13633428 ~ 13649760 (+) True AMCG00003169
AMCG00003166 mRNA upstream 167663 13519114 ~ 13557247 (+) True AMCG00003166
AMCG00003167 mRNA upstream 211661 13489808 ~ 13513249 (+) True AMCG00003167
AMCG00003163 mRNA upstream 257666 13456935 ~ 13467244 (+) True AMCG00003163
AMCG00003171 mRNA downstream 44640 13780156 ~ 13793709 (+) True AMCG00003171
AMCG00003172 mRNA downstream 88374 13823890 ~ 13835041 (+) True AMCG00003172
AMCG00003175 mRNA downstream 154414 13889930 ~ 13895822 (+) True AMCG00003175
AMCG00003176 mRNA downstream 179589 13915105 ~ 13937723 (+) True AMCG00003176
AMCG00003178 mRNA downstream 284829 14020345 ~ 14028256 (+) True AMCG00003178
TU177434 other upstream 614276 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 841912 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 985143 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 1350550 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 2237026 11486191 ~ 11487884 (+) True G140693
TU177775 other downstream 445264 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 552291 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 865801 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 2818495 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3940763 17676279 ~ 17678522 (+) True G141962

Expression Profile