RNA id: TCONS_00010909


Basic Information

Item Value
RNA id TCONS_00010909
length 674
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_004614
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16583373 ~ 16585054 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgGACCATTTTGATTTGTACATGATATAGCTAGATGTAATATGActcgtttttataaaatatgagtgtttttaatctttccCATAAGACTCTACTTCAAATTATGTACAGCTAAGCGCCCTCTACAGGAAAACTACATAAAAGGCGCTTAAAAAGGATTGCCGCCTAAATAAAGCTCCCTTAACAAAAGGAACGCAAATTTGTTCTCCGTGATCAACCCAAATGCAACTACCGTGGAAGAAAAGctGTTCTTGATGTCATACATTGCTACAAAAGGCTTTTGAAGTGGACAAGACGTGGACCAACCATGACCAGAGCGTTTCAGAGAGAAGGTGTCTCTCAAAATGCAGTGGCTCAGCTTGCTGCAATTGCAGAGCTGTACTTTGCTAACAGGGAGGGATTTAACAGCATCAGCTTCACACCAGGACAATTAACAGTTCGCTCAAAAGTGTAGAGAGttcatttttggagatttttgcataaaTGTTGTATCAATAAAAAGGAAGGGTTCACTTTTGTCTTTTTATCTGAATAAGTGATTAGAGTAGATTTGCTATGTCACTTATTGTTGCCATGTTTattgtatgtttctttgttcaataatgctcctgtttactgttggtaaaatgtagaagcaaaaaCTTACAGCACAATAAACTTGGCttataatgcca

Function

GO:

id name namespace
GO:0009798 axis specification biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050793 regulation of developmental process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010907 lncRNA upstream 13329 16567854 ~ 16570044 (+) False XLOC_004613
TCONS_00010908 lncRNA upstream 13329 16568492 ~ 16570044 (+) True XLOC_004613
TCONS_00010906 lncRNA upstream 91567 16490198 ~ 16491806 (+) True XLOC_004612
TCONS_00010905 lncRNA upstream 95806 16486965 ~ 16487567 (+) True XLOC_004611
TCONS_00010902 lncRNA upstream 353823 16216648 ~ 16229550 (+) False XLOC_004606
TCONS_00010910 lncRNA downstream 157341 16742395 ~ 16874703 (+) True XLOC_004615
TCONS_00009160 lncRNA downstream 616473 17201527 ~ 17204394 (+) False XLOC_004623
TCONS_00009162 lncRNA downstream 616502 17201556 ~ 17211669 (+) True XLOC_004623
TCONS_00010911 lncRNA downstream 839377 17424431 ~ 17427380 (+) True XLOC_004625
TCONS_00009169 lncRNA downstream 1041296 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00009149 mRNA upstream 104082 16452575 ~ 16479291 (+) False XLOC_004610
TCONS_00009150 mRNA upstream 104306 16452912 ~ 16479067 (+) True XLOC_004610
TCONS_00009148 mRNA upstream 137000 16440708 ~ 16446373 (+) True XLOC_004609
TCONS_00009146 mRNA upstream 295088 16284086 ~ 16288285 (+) False XLOC_004608
TCONS_00009145 mRNA upstream 296829 16281312 ~ 16286544 (+) False XLOC_004608
TCONS_00009151 mRNA downstream 364337 16949391 ~ 16951851 (+) True XLOC_004616
TCONS_00009152 mRNA downstream 368361 16953415 ~ 16964840 (+) True XLOC_004617
TCONS_00009154 mRNA downstream 382661 16967715 ~ 16986968 (+) True XLOC_004619
TCONS_00009155 mRNA downstream 457700 17042754 ~ 17043874 (+) True XLOC_004620
TCONS_00009156 mRNA downstream 514967 17100021 ~ 17116481 (+) False XLOC_004621
TCONS_00009129 other upstream 1201559 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 2479567 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 2925229 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009101 other upstream 3126017 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009094 other upstream 3290606 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009153 other downstream 375639 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009163 other downstream 760496 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009172 other downstream 1142488 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 1342817 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 1540604 18125658 ~ 18125774 (+) True XLOC_004634

Expression Profile

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