RNA id: AMCG00003182


Basic Information

Item Value
RNA id AMCG00003182
length 2380
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00003182
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14122783 ~ 14131275 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATCTGGGTCAGACTCCAGCCAGACAcagacagcacagtgcagtgctaACAGCAGCTGACTTCAACGCTGCTTTGACATGTTCCTGTAGGTGCCTTTTGCTCAAGCAGAAAGAGACGTGCAGTTTTCTCTGCAAGTTTGGGACACATCAGGTGGCAAgGATGCTCTTTTTCCTGGAGGGGGAGCTCTTGACTATGGGGATGTGGTCCTTAGGTCTAGGGGCAGTGGGGGCAGCCATAGCTGGGATTCTGCTGGCCAACACTGACATGCTGCTCACCACACCCGCCCAGGCCAACCTGGAATACTTGGAGGACACTGACCTCAAAACTCTGGGGGAAGACGAGAGCACGTTCAAAGCCAAGACCCTGTGGGAGCGCACGGGGGCTGTGGTTATGGCGGAGGCTGCAGAGCTGTCCTCTCTGAAACCCCAGCTGGAGCAGCTTGGGGTCCCACTCTACGCCGTGGTCAAGGAGAATATCGGCACAGAGATCAGGGACTTCAGGCCGCACTTCGCCGGGGACATCTTCCTGGATGACAAGAAACGCTTCTATGGTCCACACCGCCGTAGAATGGGCGCCTTGGGACTCATTCGGCTGGGCGTGTGGCAGAACTTCATCAGAGCCTGGAGGAAGGGCTTCCAGGGCAATGTGGCTGGGGAGGGCTTCGTCCTAGGGGGGGTCTTTGTTATCGGAGCTGGGAATCAGGGAATTCTGCTAGAGCACCGCGAGAAAGAGTTTGGGGACAAAGTCAACATCACGTCTGTTCTTGAAGCTGCCAGGAAAGTGGAAATACAGAAGTAGATATAATGCATAGACAACCCATTACTCTCCCATAAAACCTCACAGAACCCAGAACATTATTATTGAAGGAAGATAATTGATAATTGTACTGAGAACTACAAGTGACTTGACACACAATATTAACTCTATGCCCCCATAGAGAAAGAAGGAAGTACAGATTCTGCAAAGGCCAGGTTGTCTTGACAGTGTAACCAGGGGCCGGTTgcagaaaactaaaatagaaaTTTTAGACTTAATTTGACAGAccattgtgttaaaatgtaaactgactAAGATGTAgcctaaaaaatatatatatatatacacccacTGCCCCCCGAcctaaatgaaatacaattctgCATTGTATTCCAATAATTAGCACAGTAATTTTCAGTTACTGTGAACTGGGATCATCGCTATTTTAGAGAGGCCTGTTTTCTTAAagttcccagaatgcattgtgtgATAGACTTAggaagaccagtctaaggaaagaatGTTTTTTATGCAATTGTTTTAACTGAATGTTTGTCGATAGTATGACTTATAATTAGACTAAgacttagtctatgtttatgcaaccggcccaCATCCAGATCACAGCATCTATCTTTCTGAACAGATACTTTCTCATTACATCCTCATCATTTAGAATATGTAGTGCCTTCACATTTTTGGATTCTCAAAGGTCTTATGAGCACCTAAGAACAAGAGCAAAACACAATTCCTAGATACTGACACCTCAATGGAGGAAAAAGAGAAGTGAATACTGTGAATTTGAACATTGGTTCATACAAGTCAATGAAACTTACACTTAGATGTAACTTATGAATGTGTAGTAGTGCTGCTTTTAAAGGAACAAGGCTGTGTAGCTAAGGTGTGGCAATTGCACAAATGTTGTGGTACTTTCAAATTACCACAGAAACCCCTTTGATAAAAACCAATCCTAACTTGACAACCAGTTTGGAAGGCTGTCAAAGCTGTTCTGAATTCGATCTGTGCAAAGACggggcttttctttttctgctggAGGTTTGAGGCGCCGTTACATAAACCCCAAGGCATCCCAGTCTGCTTAAATGTAATATCTGCAATTATTGCTCTGCTTCAAGCTCAAGTCTACCCATACCCTTAGTAATCTAGTCTGATCTAGTTAGCTGGAAAggattttttgtctttctttatgAATTGAAGAGCTGGATTATATTGTTCCGTGGTGTTGTGCAAGTGGGGGTGCTGTATGATCCCTACCGGTGTGAACTGGACTGGTTCCTCAAGTTCCTACTGCCACTGCGCCAGTACTGTGATCTGGAAGTGCATTAATGACGGCCTGTGTCTGAAATCCACTGAGGGATCAGGCCCGATGCTTACAGTCCCAGAGCACCAGGTCAGTGCAGAGCAGACAGACGGGTGGAACCAGGAATGTGGACAccatgtgaaataaaacaaactgaatgaatCCTTTCCTTGTGCAGGCTTTTCTTTACTGGGAACACTGGGAGGATATAGAGCAGATGCAAAGGTTATAATACTGGTAGGTGAAATACATGTCCTTCATTAGCTGGCTTCATATCACGTATGGACTGGTCAGGTTTCAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016209 antioxidant activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177719 lncRNA upstream 71223 14053469 ~ 14053682 (+) True G141282
TU177681 lncRNA upstream 139479 13981375 ~ 13985426 (+) True G141249
TU177682 lncRNA upstream 140571 13981375 ~ 13984334 (+) False G141249
TU177680 lncRNA upstream 143806 13980837 ~ 13981099 (+) True G141248
TU177677 lncRNA upstream 174777 13949922 ~ 13950128 (+) True G141245
TU177856 lncRNA downstream 312698 14443857 ~ 14445355 (+) True G141401
TU177863 lncRNA downstream 331008 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA downstream 369812 14500971 ~ 14508839 (+) True G141412
TU178084 lncRNA downstream 1054912 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 1058824 15189983 ~ 15190345 (+) True G141574
AMCG00003184 mRNA upstream 5535 14114691 ~ 14119370 (+) True AMCG00003184
AMCG00003185 mRNA upstream 31891 14091908 ~ 14093014 (+) True AMCG00003185
AMCG00003186 mRNA upstream 44575 14069719 ~ 14080330 (+) True AMCG00003186
AMCG00003179 mRNA upstream 76026 14038512 ~ 14048879 (+) True AMCG00003179
AMCG00003178 mRNA upstream 96649 14020345 ~ 14028256 (+) True AMCG00003178
AMCG00003183 mRNA downstream 25342 14156501 ~ 14177456 (+) True AMCG00003183
AMCG00003191 mRNA downstream 139240 14270399 ~ 14273054 (+) True AMCG00003191
AMCG00003195 mRNA downstream 152691 14283850 ~ 14299993 (+) True AMCG00003195
AMCG00003199 mRNA downstream 261430 14392589 ~ 14396904 (+) True AMCG00003199
AMCG00003197 mRNA downstream 281592 14412751 ~ 14437585 (+) True AMCG00003197
TU177434 other upstream 1014271 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1241907 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 1385138 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 1750545 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 2637021 11486191 ~ 11487884 (+) True G140693
TU177775 other downstream 49621 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 156648 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 470158 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 2422852 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3545120 17676279 ~ 17678522 (+) True G141962

Expression Profile