RNA id: TU177734


Basic Information

Item Value
RNA id TU177734
length 2448
lncRNA type sense_over
GC content 0.45
exon number 6
gene id AMCG00003182
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14122783 ~ 14131275 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGTAACCATGCAGTGTCAGATCATTGATTCCAGAATGAGTTGTCAATCCTAACACCTCCGCAGCGGACATCAGTGTgGATGCTCTTTTTCCTGGAGGGGGAGCTCTTGACTATGGGGATGTGGTCCTTAGGTCTAGGGGCAGTGGGGGCAGCCATAGCTGGGATTCTGCTGGCCAACACTGACATGCTGCTCACCACACCCGCCCAGGCCAACCTGGAATACTTGGAGGACACTGACCTCAAAACTCTGGGGGAAGACGAGAGCACGTTCAAAGCCAAGACCCTGTGGGAGCGCACGGGGGCTGTGGTTATGGCGGTGCGCAGGCCAGGATGATTTTTGTGCAGAGAGGAGGCTGCAGAGCTGTCCTCTCTGAAACCCCAGCTGGAGCAGCTTGGGGTCCCACTCTACGCCGTGGTCAAGGAGAATATCGGCACAGAGATCAGGGACTTCAGGCCGCACTTCGCCGGGGACATCTTCCTGGATGACAAGAAACGCTTCTATGGTCCACACCGCCGTAGAATGGGCGCCTTGGGACTCATTCGGCTGGGCGTGTGGCAGAACTTCATCAGAGCCTGGAGGAAGGGCTTCCAGGGCAATGTGGCTGGGGAGGGCTTCGTCCTAGGGGGGGTCTTTGTTATCGGAGCTGGGAATCAGGGAATTCTGCTAGAGCACCGCGAGAAAGAGTTTGGGGACAAAGTCAACATCACGTCTGTTCTTGAAGCTGCCAGGAAAGTGGAAATACAGAAGTAGATATAATGCATAGACAACCCATTACTCTCCCATAAAACCTCACAGAACCCAGAACATTATTATTGAAGGAAGATAATTGATAATTGTACTGAGAACTACAAGTGACTTGACACACAATATTAACTCTATGCCCCCATAGAGAAAGAAGGAAGTACAGATTCTGCAAAGGCCAGGTTGTCTTGACAGTGTAACCAGGGGCCGGTTgcagaaaactaaaatagaaaTTTTAGACTTAATTTGACAGAccattgtgttaaaatgtaaactgactAAGATGTAgcctaaaaaatatatatatatatacacccacTGCCCCCCGAcctaaatgaaatacaattctgCATTGTATTCCAATAATTAGCACAGTAATTTTCAGTTACTGTGAACTGGGATCATCGCTATTTTAGAGAGGCCTGTTTTCTTAAagttcccagaatgcattgtgtgATAGACTTAggaagaccagtctaaggaaagaatGTTTTTTATGCAATTGTTTTAACTGAATGTTTGTCGATAGTATGACTTATAATTAGACTAAgacttagtctatgtttatgcaaccggcccaCATCCAGATCACAGCATCTATCTTTCTGAACAGATACTTTCTCATTACATCCTCATCATTTAGAATATGTAGTGCCTTCACATTTTTGGATTCTCAAAGGTCTTATGAGCACCTAAGAACAAGAGCAAAACACAATTCCTAGATACTGACACCTCAATGGAGGAAAAAGAGAAGTGAATACTGTGAATTTGAACATTGGTTCATACAAGTCAATGAAACTTACACTTAGATGTAACTTATGAATGTGTAGTAGTGCTGCTTTTAAAGGAACAAGGCTGTGTAGCTAAGGTGTGGCAATTGCACAAATGTTGTGGTACTTTCAAATTACCACAGAAACCCCTTTGATAAAAACCAATCCTAACTTGACAACCAGTTTGGAAGGCTGTCAAAGCTGTTCTGAATTCGATCTGTGCAAAGACggggcttttctttttctgctggAGGTTTGAGGCGCCGTTACATAAACCCCAAGGCATCCCAGTCTGCTTAAATGTAATATCTGCAATTATTGCTCTGCTTCAAGCTCAAGTCTACCCATACCCTTAGTAATCTAGTCTGATCTAGTTAGCTGGAAAggattttttgtctttctttatgAATTGAAGAGCTGGATTATATTGTTCCGTGGTGTTGTGCAAGTGGGGGTGCTGTATGATCCCTACCGGTGTGAACTGGACTGGTTCCTCAAGTTCCTACTGCCACTGCGCCAGTACTGTGATCTGGAAGTGCATTAATGACGGCCTGTGTCTGAAATCCACTGAGGGATCAGGCCCGATGCTTACAGTCCCAGAGCACCAGGTCAGTGCAGAGCAGACAGACGGGTGGAACCAGGAATGTGGACAccatgtgaaataaaacaaactgaatgaatCCTTTCCTTGTGCAGGCTTTTCTTTACTGGGAACACTGGGAGGATATAGAGCAGATGCAAAGGTTATAATACTGGTAGGTGAAATACATGTCCTTCATTAGCTGGCTTCATATCACGTATGGACTGGTCAGGTTTCAGCAGGGGCTCTCCTGTGTGGACTCAttttcaacacagaaaataccTACCTGACACAACACTGAGCAGACGCCATCAAATCCCATCAAATGCTTATGAAGGCATTGATAAACTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177719 lncRNA upstream 69101 14053469 ~ 14053682 (+) True G141282
TU177681 lncRNA upstream 137357 13981375 ~ 13985426 (+) True G141249
TU177682 lncRNA upstream 138449 13981375 ~ 13984334 (+) False G141249
TU177680 lncRNA upstream 141684 13980837 ~ 13981099 (+) True G141248
TU177677 lncRNA upstream 172655 13949922 ~ 13950128 (+) True G141245
TU177856 lncRNA downstream 312582 14443857 ~ 14445355 (+) True G141401
TU177863 lncRNA downstream 330892 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA downstream 369696 14500971 ~ 14508839 (+) True G141412
TU178084 lncRNA downstream 1054796 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 1058708 15189983 ~ 15190345 (+) True G141574
AMCG00003184 mRNA upstream 3413 14114691 ~ 14119370 (+) True AMCG00003184
AMCG00003185 mRNA upstream 29769 14091908 ~ 14093014 (+) True AMCG00003185
AMCG00003186 mRNA upstream 42453 14069719 ~ 14080330 (+) True AMCG00003186
AMCG00003179 mRNA upstream 73904 14038512 ~ 14048879 (+) True AMCG00003179
AMCG00003178 mRNA upstream 94527 14020345 ~ 14028256 (+) True AMCG00003178
AMCG00003183 mRNA downstream 25226 14156501 ~ 14177456 (+) True AMCG00003183
AMCG00003191 mRNA downstream 139124 14270399 ~ 14273054 (+) True AMCG00003191
AMCG00003195 mRNA downstream 152575 14283850 ~ 14299993 (+) True AMCG00003195
AMCG00003199 mRNA downstream 261314 14392589 ~ 14396904 (+) True AMCG00003199
AMCG00003197 mRNA downstream 281476 14412751 ~ 14437585 (+) True AMCG00003197
TU177434 other upstream 1012149 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1239785 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 1383016 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 1748423 12373966 ~ 12374360 (+) False AMCG00003129
TU176980 other upstream 2634899 11486191 ~ 11487884 (+) True G140693
TU177775 other downstream 49505 14180780 ~ 14184643 (+) True G141331
TU177803 other downstream 156532 14287807 ~ 14288742 (+) False AMCG00003195
TU177906 other downstream 470042 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 2422736 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3545004 17676279 ~ 17678522 (+) True G141962

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU285600 True 210 lncRNA 0.32 1 NC_048567.1 35261210 ~ 35261419 (+)
eurasian perch (Perca fluviatilis) TU285600 True 1112 lncRNA 0.47 5 NC_053132.1 8064709 ~ 8067375 (+)