RNA id: AMCG00003189


Basic Information

Item Value
RNA id AMCG00003189
length 5311
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00003189
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14180691 ~ 14188227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTGTGTGGCTGCAGCAGGTTGTGACGGCCATGGCCCTGGTGCAGACTCTGCCCGTCCCCACTGATTGCCAGAGCTCCGGAATCGACGCGCCGCACCGTTCCCTCTCGCGCTCGCCATCCGCCCAGGGCGCCATGGGCTCGGTCAGCAGCCTGATCTCCGGCCGTCCCTACCAGGAGCGCCACTGCCGGGCAGCAGACCCCACCACCAAGGGCCGCAAGCCGGGCCCGGGCGGCTTCAGGCAGCAGGATGGACAGCCCCGCAGCGCCGGCTCTCAGGACCCCCTGGTCACCAACGCCAGCCAGCCCGCCCGGAAGTCCGCTTCCGGCTCGGGGAACTACGCTTACCTGAACGAGGAATTTGTTGGCGATTGGAATGACAACCACGTGGCTGTCgctcccagcagcccctgcagCGACCCGGAGGAGGCTCGGGAGTGTCGGGGCCTTAACGGGAACATCGGGGGGCCGCCTCCCAAACTTGTCCCCGTGTCGGGCAAATTGGAGAAAAACATAGAAAAGACACTCATCCGGCCCACTGCCTTCAAGCCCGTGGTTCCCAAGAACCGCAACTCTGTGCAGTACCTCTCCCCGCGGCCAGGAGGCAGCCTGTCAGAGAGCCAGGGCAGCCTGAACCTGCTGCTGCCGGGGGCAGGGGTGGCTCCGGGGCCCGGGGGTGGGGCGGTCGGCAGCGACAAACGCAACTCTTACAGCGGGGGCCGGAACGGCGGGGGCAGCCAGTCGGGAACCCTGTCAGACTCTGGGCGCAACTCCCTCTCCAGCCTGCCCACCTACAGCAGCGCCACCTACAGCCTGGCCCACGGCGAGGCGCCCGGCGGACACCTGGAGCCCTCGAGGGTCGCCCCAGGCCACGGCCACTCCAACTCCGACAGTGGCCGCTCGTCCTCCAGCAAGAGCACGGGCTCCCTGAACGGGCGGGGGCAGCCCCTGTCCGACAGCGGCTCGTGCGGCCGCTCCCCCGCCCTGGCCGAGGGCGAGGAGGCGGTGATCCGGGAACTGGAGGACaagctgagggagagggagctggAGCTGCAGCAGCTCAGAGACAACCTGGATGAGAACGAGGCTGCCATCTGCCAGGTGTACGAGGAGAAGCAGAAGCGCAGcgagctggagctggaggagctgcgcCAGAGCTGCGCCGCCCGCCTGCGTCAGGCCTCCCAGAAGGCCCAGCGTGCCCAGCAGGTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAGGAGAAGAAGAAGCTGCAGGAGGACTTCggccagctgctgcaggagagggagcagctGGAGAAGAAGTGCGCCACCATCGAGCGTGAGCAGACGCAGCTGGGCCCGCGGCTGGAGGAGACCAAACAGAATCAAAATGAACCAAGGGTTTTTGGAGTCCAAAAATTTGTTGTTAAATTAATGGTGTGTCAGAAGTCGGGAGAGATCTCGTTGCTGAAGCAGcagctgaaggagctgcaggCGGATTTGGGCCAGAAGGCCAGTGAGCTGCTGTCCCTGAAGGCGCAGCTACGGGAGGCGCGGGGGGAGCTGCAGGCCAGCCAGGTCCACACGCAGGAGGTGAGTGCGGCCGCCCGCACCCGCACCCTGGAGCTGGAGGTGTGCGAGAACGAGCTGCAGCGGCGCAAGAGCGAGGCCGAGCTGCTGCGCGAGAAGGTGGGCTGGCTGGAGGAGGAGTCGGTCCGACTGCGTGAAGCCCTGAGCGTTCCCTCGGGCAACATGCACGCCGGGGGGCCGTGTCTGGGACTGGGGCGGGGCTACGAGGAGGAGCATCAGCTGCTGGCGTACGAGAGCGACGAGGCCAAGGCCCAGCGGCAGAGCACCGACGCGCTGCACTCGCTCAGACAGCAGGTGGAGCGGCTGCGGGCCGAGCTCATGTACGAACGCCGGCGCAGCGAGGACCAGCTGGAGGCCTTCGAGGACGAGCGGCGCGTGTGGCacgaggagaaggagaaggtgaTCCGCTACCAGAAGCAGCTGCAGCAGAACTACATCCAGATGTACCGTCGCAACCGGGAGCTGGAGCGGGTCATGAGGGAGCTcagcctggagctggagacGCGCGAGCTGGAGGAGTTCGAGGTGCGTGGCTCGGAGATCCACTTCGAGGAGATCACCGCCACCGAGATCTAGACGGGCGCCCTGCACACTCAGCCCTGTGGTCTTAACATGgagaggaaaacacaaaaggGATCCACATGCTTCTGATCGGAATCTGGACGGACACAGCGTGAATAAAGGAAAACAGCCGCTAGCCAACACTCTTCTGcccccctccacctctctcttGCACTCTCCTGCAGCATGCAATACACAAGCATTTGTAAGCAGAAGAATCTAATAAAAGGAGATGGTTGTGCATTCAGGGATAGGAATCGGAATACCGGTTCATTTTCGCAGGCCCAGAAAATCCAATGTTTGCTCCCCGCCCTCCTCCTCTCGCTCTCCCGGTTCTGTGCAATCGACTCACTGCACTCGGACACGAGTACACATATCGCCTGGCTCTTCATTGATCCAGAATGAAGTTATGACCGCTGTGATCTGGGAGATGGAGACTGATGGCAGCTGACAGACAGATGAGTCAGCACTCAGCACTCTGCCTCTCAGTGGAGGGGAGGGAGTGCAGGACCGGGCCTGAATCAGTGCTGCTGAGCTCCAGGGTTTGATCTGCCACTCTCTGGTTACCTCTCACTAATCTGAAATATTCAAAACGTGATGCACAGCACAGATAAGATGCACGTGACACCAAACACGTAAGCCAACAGACACCAACACAACAATGCCCCCACCACTTGATTACAGCAGACTCcgaatgtgtgttttgtatgtagTTACAATCCACACACTGCTGCTAAATGGGATCCACCAATGTGTAGTTTGAAATGACCCCAGGTCTTGGTAATACAACAATCCCACTTTAACAAGCTTCTTACATAATCGATTCTGATACCATGAACACATGCTAATTGATTACTGGCACAATCGATAGTGGCAGCGCACTGTGATTTCCAATAAGGTATAAAGGATCACATTCCTCtgtgtaataataatctaatgAGAGAGAGCCCTGCTGGTCTGTGAGCGGATCAGTATTGCAGGCCCGTCGGAGGCATCGATTTGGAGACTTTGGGTTTATGTTACCACCTAACGCCAGGCAGAATTTAATGTAGGCCTCTCAGTGTTCTGCGTCTGCAAATCACAGCCTTACCCGATTCATTCAGACATGCTTGCTCTAAAGATTGATTGTTAGCATCTATTCTACACTTATCATATATACAAATTCACGAAAGCTTACCGTGGTTGAATGGGAACAAAGGTTGAGGCTGAGCTGCGACCCCTGAAAGTCTTTAACATCTCCTGTGAATCTAGTGCAGAAAGAGGTACGTGTTAACCGTTGCTCCATCCGGCCTGTGCCAGTGAATTGTAGAACCTCCCACCCAACACAGATGGGCCAAACTCCCAACTTTCCCCCACCCCTTAGTTCTGAGTTAGGCAGGTACTGTAGGAGAGATGGGCCTAACTGAGTAATGACGGAAGTGAGAACCTTCCCCCGGAAAATGGACTGACCGTGACTCCTGCCCTCTGATCTTTCTGCTGTCTTTGGCTGTGGAGACCAAAAAGTGGAAGCGACCTCAGAGTGGTTATCTGCGTGTTTTGCTGCATCCCGTACGATAGCCCTGGCTCCAATCCAactttgcaaaagaaaatactttatttttgctGAGAAATCCTattcaagaaaaatacaaaatatatatatacgtatataaatatatatttttatagcagCTCTTGCTATTTTGTGGAAACTCTAGGACACGTTTAACAGAAGCGAAGACATACCCAATCTCTGTACCTGGTCCACATCGGCCCTTCCATGGAACATGTCCAAGTGGTGCTGATGTAACTGTGATACAGAGTTGGTGTTGTGCTGACAGTcacttacacacagacacatggagAGCGCTGTTGAAGGCAGAAACCTTTTATACAGAAGCATATTTGGTAGCACGTCCACAGTTTTCCCTGGGCTCTTCCCAGCATTACTTGCTATTCAGTGTGGCGTACATATCCCTGCCTTCCCATAGTCCACTCTTGCTGTAGCCCTGAAGTGGAATATGTCAAGTCATATCACATCTGCTGGGCACGTGACACTGCCCAGGAGGGGCACGCTAATAGCGTGTGACCTCACAGGGCAGAGACTGTGCTCTGATTTTAGGACCGAACAGATGACGGGTTACATGCAACAGAAGGGAAGGGGGAATCGCCAGCACAATCCACGCCTGTGTTGagaaatttaaatgtgaaagagagagatccTTGAGGGGAAAATATCATGGTACCTCCAAGTATTTTCTGTCTAAGTTACCATTGTTAATGAGAcctaaatacaaacaaacacccCACTGAGCAAATTGTCACATGGATTAAGTCAGTGGCATCCAGCACTGGTCCTGGGGAGCCAAAGTGTCTTGTgggtttagttttctttaacaaCTTAATTGACTCAATTTGGGCCTGGATTCATCACTAAATAGACTGAATTCATAGCAACTGTAACAGAGAGATCAATAAAACCTGCAggttgtggctctccaggaacagggttgatCACAACTGGATTAAGTAGTTGAAAACAAAAGTCTGGACACTAAGGGCCGTTtccacagacccagattagcaccaGTCTTGGAGTACTGGtcctaatcaaggtctgtgaaaccagctgtaacACACTTTTGTCCCTGAAGGAGTGAACTATGAAAGCCCTGGTTTacactgtgttttttgtggACACAGAAGAACAAAAGCCATTATTCTGCCAAAGGGAATTCCTTGCCTCTGTAAGCACATTGTTCACCCGTCTCACTGTTCCTCTCCTTGCTCCTCTACCTGACCCACACTGTACATTTAGTACTAAAATCCTCTGTGTAAATATTCCTAACAGTGAACGACATAGTGAAATACTCTATATCTTGCAGACGCACTATATCGATTTAAACATTAGCCACTGTGAATAGACCAAAGCCAAGTAACACTGCTGttcttatctttttcttttttccttgtgCTGTATGTGTGAATTAGTGAtcgttttctgtttttttttaatacacagtatgtagtcattaatgtatatttttcatgctgtacattttttttttctgtacaaaaattactgtttttaataaaaataaaaagtttcagttcattttaaacacttgtatgtgtgtatatttgggCTGTATGGGGAGGTGAATGTATATTACGGGTTCTAGAGACCTCCGATCCAGG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007017 microtubule-based process biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060026 convergent extension biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177763 lncRNA downstream 49625 14124884 ~ 14131066 (-) True G141319
TU177747 lncRNA downstream 116520 14063800 ~ 14064171 (-) True G141305
TU177746 lncRNA downstream 117165 14063172 ~ 14063526 (-) True G141304
TU177696 lncRNA downstream 208725 13971767 ~ 13971966 (-) True G141261
TU177695 lncRNA downstream 242982 13935284 ~ 13937709 (-) True G141260
TU177825 lncRNA upstream 185740 14373967 ~ 14374169 (-) True G141372
TU177827 lncRNA upstream 189422 14377649 ~ 14378313 (-) True G141374
TU177857 lncRNA upstream 255604 14443831 ~ 14446505 (-) True G141402
TU178011 lncRNA upstream 442185 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA upstream 471192 14659419 ~ 14659991 (-) True G141520
AMCG00003188 mRNA downstream 37265 14133020 ~ 14143426 (-) True AMCG00003188
AMCG00003187 mRNA downstream 72400 14096790 ~ 14108291 (-) True AMCG00003187
AMCG00003181 mRNA downstream 119562 14054901 ~ 14061129 (-) True AMCG00003181
AMCG00003180 mRNA downstream 186324 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003177 mRNA downstream 228760 13942314 ~ 13951931 (-) True AMCG00003177
AMCG00003190 mRNA upstream 72640 14260867 ~ 14270168 (-) True AMCG00003190
AMCG00003193 mRNA upstream 95178 14283405 ~ 14286345 (-) True AMCG00003193
AMCG00003194 mRNA upstream 101968 14290195 ~ 14305579 (-) True AMCG00003194
AMCG00003192 mRNA upstream 153543 14341770 ~ 14367223 (-) True AMCG00003192
AMCG00003196 mRNA upstream 196868 14385095 ~ 14385715 (-) True AMCG00003196
TU177540 other downstream 750367 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 750367 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1301270 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1325350 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 481245 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 893428 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2559834 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5355421 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5364644 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile