RNA id: AMCG00003190


Basic Information

Item Value
RNA id AMCG00003190
length 2633
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00003190
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14260867 ~ 14270168 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGGTTTATTTTGCAGCGCAGGCGCGTGGTGGCAGAGCTGCGCGCGAGCTGGGATAACAGATTCAGGATGTCCATTTGTCGGTAGCTGGGGCCAATGCTGTGGGTCAGTTTGTTGTTGAAGAGGCCGGCCTGTTTCCTTCGGGTGGTGGGCTCCAGGAGCTTCCCCCACCTCAGGCTCACCTCAGCGGCCCTGCTACCTGCCAGCCACCCCCGTCCAGCCCcgttgctgctgctgcggccCCTGCTCCCGGAGGTTGGGTTTCTCAGCCACCGCCGGAGCTTTAAAAAGGACCTCAAGTCCACTGTGGACCTGCCTGTGACCCCGGTGAACGTCACGGACATCAAACACTATCTGCGGTCCAAGAATATCCCCTTCCACGATGGCTACAGCTGCCTGCACACCCCCAGTGTCTTCAGGCCTGGCTCTGAGGGAGCGGAGAAGGGCGGCTACACCCTGTTCATTGACAAGACCACGGGGCAGTTCCTGTGCACCGAGACGCTGGTGGAGGGGAGCTGGGAGGACCTGCAGGACTGCGTGGAGGTGATGCAGAACGAGGGCCGGGAGTCCCTCAGCCCGGGCGTCCTGTTGGGCTACTCCGAGAGTGAGGAGGAGCAGGGGGAGCGAGCGCTGGAGTGCAGCGAGGTCCAGAGGATCTGGGCCAGCTCGGTGCCGCTCTCCGACCTGCCCGACGAGGAGGAAACCCACCTGGTCAAGACGATGTTTGGAATAGGCAAGATCTCCAGTCTCACCCTGAAAAAGTTTGGGGTTCGTTTCTTTAAGCCCACCAAGAGCTTGGTCTTCCCCTGGCTGTCCGGCAGGGACTCCAGCCTGAGGGGGCTCAAGCTGCTGACTGCGCAGTGCCTGGGGGACGGCAAGGTGGTCTACACCGAAGCCACCCTCCCCAGGCCAGCCGCCTTCCACAACCTGTTCGGGCTGCACCTGGTGGCCCGCAAAGACTCGGAGGTGGTGTTGACGGGCCGGGAGGTGGACACGCTGGCCGTTAGCCAGGCCACGGGGTTGCCCAGTCTGGCCTTGCCCCGTGGGGTGAGTTGCCTGCCCCCGGTGCTGCTGCCCTACTTGGAGCAGTTCAAGAAGGTCACGCTGTGGCTCGGAGGGGACATGCGCTCCTGGGAGGCTTCCAAGCTGTTCTCCCGCAAGCTGGGCCTGAAGCGCTGCTCCCTGGTGCGGCCCGGGGACACCCAGCCCTGCCCCAGCGATGCCCTGGCAGCGGGCAAGAGCCTCGGCCGCATCCTCAAGACAGCCATCCCGGCCGCCCACAAGTCCATCGTGTCCTTCAGGCAGCTGCGCGAAGACGTTTATGGGGAGCTGGCCAATAAggagcaggtggctggggttaaGTGGGCCCGATTCCCCGAGCTCAACAAGATCCTCAAAGGCCACCGCAAGGGAGAGCTGACTGTCTTCACAGGCCCCACGGGCAGTGGGAAGACCACCTTCATCAGCGAGTGCGCCCTGGACCTGTGCATGCAGGGCGTCAGCACCCTGTGGGGCAGCTTCGAGATCAACAACGTGCGGCTGGCGAAGATCATGCTCACCCAGTTCGCCATGCAGCGGCTGGAGGACAGTCTGGACCAGTACGACACCTGGGCCGACAAGTTCGAGGACCTGCCGCTGTACTTCATGACCTTCCACGGCCAGCAGAACATCCGGTTTGCCATGCAGGATCACATAATCGGCGCCTTCAGGAAGTTTGCCACCAACAGCAACTGCCACGTGACCCTGATCATACACCCCAGGAAGGAGGAGGATGACAAGGACCTGCAGACCGCCTCCATCTTCGGCTCGGCCAAGgccagccaggaggcaGACAACGTGCTGATCCTGCAGGAGAAGAAGCTGGTGTCGTGCCCGGGCAGGAGGGCCCTGCAGGTGGCCAAGAATCGCTTTGACGGGGACGTGGGCATCTTCCCCCTGGAGTTCCAGAAGACCTCGCTCACCTTCTCCCCGCCGCTCAGCAAGGCCAAGCTGCGCAAAGTCAAGGCCGAGGAGACGCAGCAGGCAGAAAAATCCGCCAAGGTGCCGAGGGCAGAGAAAGGAGAGAAGACGGTGAAGACGGAGAAAGTCCCCAAAGCTGAGAAAGGAGTCCGGTCGAAGCCCCCAGGAGAGCCAGGGGGTGTGAAGTAGTGGGGCTGTAGGGACGCAGGTGAATTGAGACATGTAATGCCCTAGTTAGAGGTTATCCGTCCAcgtttcttctgtttcttctggACTTTAAAGGAAGTTGAAACACAGAAATAGTCAATGATATGCTAAAGATGAATGCTAAAATTTGAATACTGCTGAGTTTGCTGCTCTGTATGTCTGAGTACACAAGATGTGAAATACTATTGCACTGTACCCCAGTTCAATGTTctctttaattatattaattatgatACTTACAGGACATACCGGTGTTGAGTTCAGTAGAGGGTAAATGTGTGGAAGAGACAGGCTGTCAATAAGTGATGTTAATAAGAAGGTGTCCGTTAAGAGGGAAAATAGACAGTAATGTAATGCTCTCTTTGTTATATACTGGCAGATTATGCCACTGATATAAGGTATGAAAGAAATCAAATGATATGAGTCTTCTTTTCCATGAATCccataaagtattttaatacaaaaaa

Function

GO: NA

KEGG:

id description
K17680 PEO1; twinkle protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177763 lncRNA downstream 129801 14124884 ~ 14131066 (-) True G141319
TU177747 lncRNA downstream 196696 14063800 ~ 14064171 (-) True G141305
TU177746 lncRNA downstream 197341 14063172 ~ 14063526 (-) True G141304
TU177696 lncRNA downstream 288901 13971767 ~ 13971966 (-) True G141261
TU177695 lncRNA downstream 323158 13935284 ~ 13937709 (-) True G141260
TU177825 lncRNA upstream 103799 14373967 ~ 14374169 (-) True G141372
TU177827 lncRNA upstream 107481 14377649 ~ 14378313 (-) True G141374
TU177857 lncRNA upstream 173663 14443831 ~ 14446505 (-) True G141402
TU178011 lncRNA upstream 360244 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA upstream 389251 14659419 ~ 14659991 (-) True G141520
AMCG00003189 mRNA downstream 72640 14180691 ~ 14188227 (-) True AMCG00003189
AMCG00003188 mRNA downstream 117441 14133020 ~ 14143426 (-) True AMCG00003188
AMCG00003187 mRNA downstream 152576 14096790 ~ 14108291 (-) True AMCG00003187
AMCG00003181 mRNA downstream 199738 14054901 ~ 14061129 (-) True AMCG00003181
AMCG00003180 mRNA downstream 266500 13964881 ~ 13994367 (-) True AMCG00003180
AMCG00003193 mRNA upstream 13237 14283405 ~ 14286345 (-) True AMCG00003193
AMCG00003194 mRNA upstream 20027 14290195 ~ 14305579 (-) True AMCG00003194
AMCG00003192 mRNA upstream 71602 14341770 ~ 14367223 (-) True AMCG00003192
AMCG00003196 mRNA upstream 114927 14385095 ~ 14385715 (-) True AMCG00003196
AMCG00003201 mRNA upstream 135293 14405461 ~ 14411926 (-) True AMCG00003201
TU177540 other downstream 830543 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 830543 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1381446 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1405526 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 399304 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 811487 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2477893 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5273480 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5282703 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile