RNA id: TU177803



Basic Information


Item Value
RNA id TU177803
length 608
RNA type TUCP
GC content 0.55
exon number 2
gene id AMCG00003195
representative False

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14283850 ~ 14299993 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACATAATAACCTGTCCCAGAGAGACTGTAACAgtgacaaaatacaaagcacCAAAGAGAGCCCGCACATCTAATCAACCTCTCCAAGTGAAATACAATAGCATATTTGAATTCTATTAAAGAATTAAAGACAcccgtgtgtgtttgtgccatCTGACTCAGTTCCGGCTGAAGGTATTCCCCGTCCTGAGGGCTTCTGTCCCTGCTTGTCCCTCCCCACAGTGCATCACAGCCCAGTTCAGGGCCAGGGGTTTCAACTCCTCGTGGGACCTCCCCGACAACGTGCTTGACTTTGTCCGGAGACACCCGCTCATGGCCGAGCAGGTCCGGCCACAGCAGGAGCGCCCCCTGCTGTTGAAGAGGAACGTGGACTACACCAAGATTGCCGTCCACAGAGTGGTGGCCCTGGATGGACAGCAGTACGACGTGCTCTTCATCGGCACAGATGGAGGCTGGCTGCACAGGGCCGTGGCCGTCGGGCCCCGTGTCCACATCATCGAGGAGATGCAGCTGTTCAACCAGCCGCAGCCCATCGACAGCCTGGTCATCTCGGAGGCTCAGGTTAGCAGGAGGCAACACCCTCCCAACCATTCACTCTCATTCTCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177734 lncRNA upstream 156532 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 234125 14053469 ~ 14053682 (+) True G141282
TU177681 lncRNA upstream 302381 13981375 ~ 13985426 (+) True G141249
TU177682 lncRNA upstream 303473 13981375 ~ 13984334 (+) False G141249
TU177680 lncRNA upstream 306708 13980837 ~ 13981099 (+) True G141248
TU177856 lncRNA downstream 155115 14443857 ~ 14445355 (+) True G141401
TU177863 lncRNA downstream 173425 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA downstream 212229 14500971 ~ 14508839 (+) True G141412
TU178084 lncRNA downstream 897329 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 901241 15189983 ~ 15190345 (+) True G141574
AMCG00003191 mRNA upstream 14753 14270399 ~ 14273054 (+) True AMCG00003191
AMCG00003183 mRNA upstream 110351 14156501 ~ 14177456 (+) True AMCG00003183
AMCG00003182 mRNA upstream 156648 14124905 ~ 14131159 (+) False AMCG00003182
AMCG00003184 mRNA upstream 168437 14114691 ~ 14119370 (+) True AMCG00003184
AMCG00003185 mRNA upstream 194793 14091908 ~ 14093014 (+) True AMCG00003185
AMCG00003199 mRNA downstream 103847 14392589 ~ 14396904 (+) True AMCG00003199
AMCG00003197 mRNA downstream 124009 14412751 ~ 14437585 (+) True AMCG00003197
AMCG00003202 mRNA downstream 157191 14445933 ~ 14455523 (+) True AMCG00003202
AMCG00003198 mRNA downstream 167999 14456741 ~ 14459478 (+) True AMCG00003198
AMCG00003203 mRNA downstream 193327 14482069 ~ 14491605 (+) True AMCG00003203
TU177775 other upstream 103164 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1177173 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1404809 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 1548040 12730731 ~ 12739767 (+) True G140939
TU177209 other upstream 1913447 12373966 ~ 12374360 (+) False AMCG00003129
TU177906 other downstream 312575 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 2265269 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3387537 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 4378025 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 5246951 19535693 ~ 19537091 (+) True G142172

Expression Profile