RNA id: AMCG00003201


Basic Information

Item Value
RNA id AMCG00003201
length 1095
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00003201
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14405461 ~ 14411926 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACACGGTCCAGCAGCACGCCTGCGCAGCACAGACCCGGCGACTCATCTGTACTGATACACCATGGAGTCCTACGATGTCATCGCCAACCAGCCGGTTGTTATCGATAACGGCTCCGGTGTTATAAAAGCTGGTTTTGCAGGAGATCAAATTCCAAAGTACTGCTTTCCTAATTAtgttggGAGGCCAAAACATGTGCGAGTTATGGCTGGTGCCTTGGAGGGAGATATCTTCATTGGTCCAAAAGCTGAGGAGCACAGGGGCCTGCTGACAGTGCGGTACCCAATGGAGCACGGCATAGTGAAGGACTGGAACGACATGGAGAGGATCTGGCAGTACGTCTACTCCAAAGACCAGCTCCAGACCTTCTCAGAAGAGcatCCTGTCCTGTTGACAGAAGCCCCCCTGAACCCTCGCCGGAATCGTGATCGTGCAGCGGAGGTCTTTTTCGAGACCTTCAACGTCCCAGCTCTCTTCATCTCAATGCAAGCTGTTCTCAGCCTGTACGCCACTGGGAGGACGACAGGGGTGGTGCTGGACTCGGGGGACGGGGTGACCCACGCTGTGCCCATCTACGAGGGCTTCGCCATGCCCCACTCAATCATGAGGATCGACATTGCCGGCCGTGATGTCTCCAGATACCTGCGGCTGTACCTGCGCAAGGAGGGCTATGACTTCCACACCTCCTCAGAGTTTGAGATTGTGAAGACCATCAAAGAGCGAGCCTGCTTCCTGTCCATCAACCCCCAGAAAGATGAGACTCTGGACACGGAGAAAGTGCAGTACACACTACCTGATGGCAGCAACATTGAGATCGGCCCAGCCCGCTTCCGAGCCCCCGAGCTGCTGTTCCGTCCGGATCTGGTGGGGGAGGAATGCGAGGGAATCCACGAGGTGCTGGTCTTCGCAATCCAGAAATCGGACATGGACCTGCGCCGGACCCTGTTCTCCAACATCGTGCTGTCTGGGGGCTCCACACTCTTCAGAGGATTTGGAGACCGGCTGCTGAGTGAGGTGAAGAAGTTGGCCCCGAAAGACGTCAAAATCAAGATTTCTGCTCCCCAGGAACGATTGTATTCGACATGGATTGGGTAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177827 lncRNA downstream 27148 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 31292 14373967 ~ 14374169 (-) True G141372
TU177763 lncRNA downstream 274395 14124884 ~ 14131066 (-) True G141319
TU177747 lncRNA downstream 341290 14063800 ~ 14064171 (-) True G141305
TU177746 lncRNA downstream 341935 14063172 ~ 14063526 (-) True G141304
TU177857 lncRNA upstream 31905 14443831 ~ 14446505 (-) True G141402
TU178011 lncRNA upstream 218486 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA upstream 247493 14659419 ~ 14659991 (-) True G141520
TU178079 lncRNA upstream 742090 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 752028 15163954 ~ 15172448 (-) True G141571
AMCG00003196 mRNA downstream 19746 14385095 ~ 14385715 (-) True AMCG00003196
AMCG00003192 mRNA downstream 38238 14341770 ~ 14367223 (-) True AMCG00003192
AMCG00003194 mRNA downstream 99882 14290195 ~ 14305579 (-) True AMCG00003194
AMCG00003193 mRNA downstream 119116 14283405 ~ 14286345 (-) True AMCG00003193
AMCG00003190 mRNA downstream 135293 14260867 ~ 14270168 (-) True AMCG00003190
AMCG00003200 mRNA upstream 60418 14472344 ~ 14479936 (-) True AMCG00003200
AMCG00003205 mRNA upstream 78858 14490784 ~ 14496042 (-) True AMCG00003205
AMCG00003206 mRNA upstream 87367 14499293 ~ 14512805 (-) True AMCG00003206
AMCG00003204 mRNA upstream 104243 14516169 ~ 14531632 (-) True AMCG00003204
AMCG00003213 mRNA upstream 219431 14631357 ~ 14632106 (-) True AMCG00003213
TU177540 other downstream 975137 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 975137 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1526040 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1550120 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 257546 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 669729 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2336135 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5131722 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5140945 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile