RNA id: AMCG00003205


Basic Information

Item Value
RNA id AMCG00003205
length 2147
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00003205
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14490784 ~ 14496042 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTCCCTGTGGATTATGGCATTCACATCTGCTGGGGTTGCCAAGCATCACGAGTCTCCAAGGGGCGCTTCAGCCTGCTTCGGCAAAACTTACAAACACACTCGTCCGCATCCATCAGCAGCGCTCGTCGGCCGAGGCTCAGAGATGTGCGAGGTCCAGTGCTCGGAGCGCGGCTGCTGCCCCGGAGGCCGGGCTCGGATGGAGAGCTACGTGTTCAACTGTGAGCTTTCTTCCAAAGTCCCGTTTTACACTTTCCAAGGAGACGAGGAGGAGAGTTTCGAGCAGTTCCTGGAGCTCCGCACACTGTGTCTGGGAGACGGAGCCAAGCCAGAGCACAACGTCGTGGAGGTGACGGCTCTCAACCACCGCGGCAAGAAAGTGTCGGTGCCCGTAGCCAACCTGCACCTCTCCTGCCTGCCCATGGTCAGTTTGGGGGAGTTTGAGCTGAAGACCCCTGTGACTTTCCGCCTGAAGTCCGGCACCGCTTATGAAGACGACGAATCTGACATgtcagaagaggaggagaatgaGGAAGAGATCGTCCCCATCAAGCCAgctaaaaagaaacagaaattgTAATCCTCAAAGGTACCACTCGCTCTGTGTGTCCTTTGTCTCGACTGTGGGACCACACTGAGGAGGTGaaggctggtgtgtgtgtgtgtgtatgtttgaaagagagggagagaaatccAGAGGTTTTCACTCAAACTGAACATATGTGAAGTGACTATATGCTGGGCGACACCAGTCCTCAGTGGCCGGACTCCTGCAggttttaatgtactttttaacagCAATACCTGTATCTGATGGGTGATCTGACCTATCCATATCACCATTCATGCTGTCCATGAGTTTTATCAGATTTCCAGGGGGGGCTTTTTCTCCCCTAGCCCTGTTCCTCTTAAGGAATTCTCCCCTTCTCTTTAGAAATATGTTCTTTAGATGTATACATATATCACAGCCACATTTTTTATATACGTGTGACCATTGTcatcttatttgttttcttttcagtacTGGTTGTCAGTTTGGTAAATATGCTGCAGAGTTCttacagtgttgtgtgttcGCAGACTGCCCATGTCCACGGGGCTCAGGAATAATGTACAGAGAGAGTGACTCTGGGTAGTGGCTCCACTGACTCCAAGCCATGCTCCAGTGGCTTctgtttatttcactgtaatCGTAAAGAATCCCCCCATTATGAAAGGAATTGCATGGCTATTGCACAGCTGATTCATCTATAATGTCACCCCCTCCACCTACCCACACCTGTGCTGCTGTTGGCCCTTGTTCAAAGAGCAGCAGTTCTCTGTaagtggattttgttttgtatatttatatacaatgtataaataaaacactttttagttcttttttcaaaacatgtcctttctttaattaactCATACCAGATTGTGTTGGGACTGGAAACAAGACCCCCCATTGAATACCAATCTAAGCCATTTTCGGTTTCAAAAGCTGTAGCATTTTTAATACCCATCAAGATGCCTTTGTAAATGTAGTTTCCAGATGCAAGTAAACAGTTTGTAAACTCTGAAATGGTTTTGGTTCCTCCGTGTTACTTGTCCAGGGGCCTGCAGTGTAGGTCTGAAATGGACCTGCGCTGTGCAATGGGAATTGTTTCCATCCCCATATCGGGCCGTGCATTGAGTTCCTCAGCTCGGGTATTTGATCAGCGAGCGTGAGGTCTGGTTTGGTGTTGAGATGCCTGTGTAGCTTCTGGTTGCCCACAATGTAACGAGGTGTCGTGGCTGGAGAGACCCGAGGCCCAGTAGAGGCCGTACTGTCACACTGTTGGGTCTGGGCAGCTCCAAAGGCACAGAGGCAGGGATGAGGAGGTAAGACATGCCAACCTCTCTTGCACAGAAATCCACCTTCCCTGTGAGCAGTACAGAAGCCACCACGTCTCACACGCACCTGTTAATGATATTATTCTACCACGGATTTGAGTTCATGAGTTGTTTTGGAAGTTCCTGAGTCATCATGGGGATCCTGAAGTCTCCAGATGCTTCCTAGAAGGCTTTAGAAagtgtctttttctctcttcaatGGCAATCCACAATGTAAGGCAGTGCTCCCTTCAAACACTAAGTGGACAATACAGCTGatccccaac

Function

GO: NA

KEGG:

id description
K11278 NPM3; nucleophosmin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177857 lncRNA downstream 44279 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 112471 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 116615 14373967 ~ 14374169 (-) True G141372
TU177763 lncRNA downstream 359718 14124884 ~ 14131066 (-) True G141319
TU177747 lncRNA downstream 426613 14063800 ~ 14064171 (-) True G141305
TU178011 lncRNA upstream 134370 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA upstream 163377 14659419 ~ 14659991 (-) True G141520
TU178079 lncRNA upstream 657974 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 667912 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 721432 15217474 ~ 15217807 (-) True G141583
AMCG00003200 mRNA downstream 10848 14472344 ~ 14479936 (-) True AMCG00003200
AMCG00003201 mRNA downstream 78858 14405461 ~ 14411926 (-) True AMCG00003201
AMCG00003196 mRNA downstream 105069 14385095 ~ 14385715 (-) True AMCG00003196
AMCG00003192 mRNA downstream 123561 14341770 ~ 14367223 (-) True AMCG00003192
AMCG00003194 mRNA downstream 185205 14290195 ~ 14305579 (-) True AMCG00003194
AMCG00003206 mRNA upstream 3251 14499293 ~ 14512805 (-) True AMCG00003206
AMCG00003204 mRNA upstream 20127 14516169 ~ 14531632 (-) True AMCG00003204
AMCG00003213 mRNA upstream 135315 14631357 ~ 14632106 (-) True AMCG00003213
AMCG00003214 mRNA upstream 173373 14669415 ~ 14674342 (-) False AMCG00003214
AMCG00003215 mRNA upstream 180665 14676707 ~ 14773565 (-) True AMCG00003215
TU177540 other downstream 1060460 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1060460 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1611363 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1635443 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 173430 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 585613 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2252019 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 5047606 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 5056829 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile