RNA id: TU177906


Basic Information

Item Value
RNA id TU177906
length 2239
RNA type TUCP
GC content 0.39
exon number 3
gene id AMCG00003207
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14601317 ~ 14605548 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGATTCGCAAGAAAAGAAAGACGGGTATCGGTAGAGCCGAGTGCCGGTGTTGTGTGATTCACTGCTGACTGGGCATTAACCCGAGCCTGAGGATGGTCCGTATTTTGGCGAACGGAGAGATTGTGCAGGACGACGACCCCCGGGTCCGCAAGCCCCCCAACCGCCGGGAGGAACTCAATAATGTGCCTCGTCGGGGATTCGTGCGCCACACTGCGGGAGGAGCTCCTGCACAAAATGGCCCCGCTGCCCCCAGGGCTCCTGGGAGGTCAGCCTTCGCAGATATGAACCAGTTGCTGGTGAACCTCGGCTTCCCACGCTGGAACATGGGTGCCCAGGTCATCGAGCCCCTGATGTCCGTGATGATCCTGCTGGTCATCGCTGTGGTGGGGCTCCGGGGAATCCTGCTGCTGGGGCTGGTCTACGTGGTGATGACGCGCAGCCAGCGCTGAGCCCGGTTTTTGCCGCCCTGTGGCTCAGATTGGAAACTGCTTTTGTGATCTTAATCTGGGCTAAAACATGatttgactgacacactgtttGAGAAGGCACCTTCAATCTGGCAAAGGCATGTTTTGATATTCAATGGGTCTCCTGTGTAGCAAAGCAAATTTATCAAAACTGAAATTGTGACATGAAGTTCTACGAATGTAACTGTGCCATTTACAGGAAAGACTCCGAGGGTATATTCAAAAGCCTTAACGGGCAGTTTTCATTGAGCTGCCAAACGGTGTCTTAGGAGGATTTTTGTACGATATGGGAGTGTGACTACGCCTTATGCTTCCCACAGGCTGTTTTACTCTGGTGAGCACCATAGTAACTAAACATGCACTGAGGCAGAGACACGTTACTCTATTCATCCAATATATCTGTTTGGTGCTTTTTATAAAGTCTGTTTAAAAGTTTAATCCTGGAAACTCAAAGGAAAGATCAAGGGGCAGTGTGTCATGAGTCTCTTGGACCTAtgtgtggaaaaataaagagaTGCAACTTTTTCTTCTAATCACAATGTCAATTTCaatgatttcagtttttcactgAGAGTTTATTGTACATAGTTTAATGATCACaggatttattataatttcagttaaattctttttttttctccagttctTTCAAATATGGATAAGTACAAGATATTATCTGAGGCATTGAGTTCATTATTGATTTACTTATGCATAAAAGCATTCTCTGGCACTGTCCTTAATTGGGACCATGTAATGaagtcaatattattttaaatgaagatgatgatttttttttcagatttacgGGAATGTCTCAGGTTTTTATCTCAGGTGCAAGTCAATAATCAGATTGCATTTCAAAGTATTGTAGTAACCAATGCACATTTAATCTAGTGCCTAGAATGCTTTTTTTGTAATGACCTAATATAGCAATCTACTGTATTTGGTATCATAATTCTGAAGTTACTGACCTtgagtgatgatgatgattattatttattttaattgtaaataataaatacaaattatattgcaGAAAATCATcctaaaatatttaacataattgGAGCACATGATGGAAAATTTCTTtttagaaaagtatttgaatGCGTTTTATAGCCTATATAAACTGGAAAACAGGTGTACCCTTTTCTTGAAGAAATACTCGTATCAGACtaagaattaatttaataactcTATACAAGTAGGCCTAGATGTTCTGAATGGAgacaatgtaaaattaatatggCTTTTGTATGAATTTAAAGTTACAAACAATGACAGCAAAATTGTATGTAGCATAACTTCAGGTACAGTTTGTGCTTCTTTCAAATGAATGAAAGGCCAATATACAATATGCATGTTGTATTATCAACGGTCTTAATGGAATTATATGTGCTTATTattggtgtatttattattttaaataacattttgacttttttttttatataaagttcaGTGGTGTAGAGTGAAACATGTAGATGCCAGTTTTTACCATGTTAAAATGTGATAAACTAGTTGCTTGTATGAAACACGTTAAATGACAAATTTGGGATGATGATGAGGGATGCAGTTATGTCCTGTTTGTGTCATGGCTCTTAACATGGTCTTTCATTACCCTATCCCCTGTGACAACATCTCAAATATGTCTTACATTTTGCATGCTTTACAGCTTATAGCACAGTTTGACTTTATCCCtgaattggaaaaacaaaacaaaaaaaaacaccttttcagTGAATCAAGTATTTGTATATGAAATTACt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 84807 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 92478 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 155962 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 470042 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 547635 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 580634 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 584546 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 611805 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 647403 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1885989 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003208 mRNA upstream 2664 14595659 ~ 14598653 (+) True AMCG00003208
AMCG00003210 mRNA upstream 8752 14571728 ~ 14592565 (+) True AMCG00003210
AMCG00003211 mRNA upstream 37898 14556894 ~ 14563419 (+) True AMCG00003211
AMCG00003203 mRNA upstream 109712 14482069 ~ 14491605 (+) True AMCG00003203
AMCG00003198 mRNA upstream 141839 14456741 ~ 14459478 (+) True AMCG00003198
AMCG00003212 mRNA downstream 38172 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003209 mRNA downstream 51960 14657397 ~ 14665563 (+) True AMCG00003209
AMCG00003218 mRNA downstream 131917 14737354 ~ 14765347 (+) True AMCG00003218
AMCG00003217 mRNA downstream 182688 14788125 ~ 14800222 (+) True AMCG00003217
AMCG00003216 mRNA downstream 203181 14808618 ~ 14826815 (+) True AMCG00003216
TU177803 other upstream 312575 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 416674 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1490683 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1718319 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 1861550 12730731 ~ 12739767 (+) True G140939
TU178303 other downstream 1948574 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3070842 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 4061330 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4930256 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 5013444 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile