RNA id: AMCG00003209


Basic Information

Item Value
RNA id AMCG00003209
length 1716
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00003209
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14657397 ~ 14665563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCtttcctgtttctgttttgCCGTGCAGAGTGCCATGGAGGTGTACAAAGAAATCCTGCTGGTGTATTTGGATGACAGCCGGCGGTTTGTGAATACGCAGTGCCAGGGGCTGGAACCGTGGCAGATCATCGCAGTGACGATGGGCTTCACACTGCTGGCGGTGTGGCTTCGGGGGTTTCTCTTCCAGCAAGACAgTTTGAAATCAAGAATTAAGAAGCAGATTTTTAAGATTATAAGAAAAATCCCATTCATTGGTGCTACaATTCAGGCTCAGCTGAATAAAGCTCTAGATGACATGGCATCCAGTCTGTTCACCTTGAAAGATGGAATGAGCTACACGTGCGCCCTGCCGGTCCAGGGCCTTTTGCAGTCCGAGGTTCTGGAGGAGCTCAAACAGTACAGTGCCATGGGGGAGGTCCAGTGGGAGCAGGGCAGGGTCTCCGGTGCCGTGTACAGTGGAGATGAAACCCTCACCAAGCTGCTAGTGAAGGTTTATGGGGACTTCGCTTGGAGCAACCCCCTGCATCCTGATATTTTCCCCGGTGTGCGCAAGATGGAGGCCGAGGTGGTGCGAATGGCCTGCACGCTCTTCCATGGGGGACCACAGTCCTGTGGCACGGTTACATCTGGAGGTACTGAAAGTATCTTGATGGCTTGCAAAGCATACAGGGATCTGGCAAGAGAGCGTGGCATCAAACACCCAGAAATCCTTGCACCTATCAGTGTCCATGCAGCGTTTGACAAAGCGGCACACTACTTCGGCATGAAAATCATCCACATCCCCCTGAATCCGACAACCATGCAAGTGGACGTGAAGGCGATGAGGAGCGCCATATCCAAGAACACCGCCATGCTGGTCTGCTCTGCTCCTCAGTTCCCTCATGGTGCTATGGACCCTGTGCAGGAGGTGGCAAAGTTGGCTGTCAGATACAACATTCCATTCCATGTAGATGCTTGTTTGGGTGGCTTCCTCATAGTTTTCATGGAAAAGGCCAACTACCCACTTGCTCCGTTTGACTTCCGGGTGAAGGGGGTGACCAGCATTTCAGCCGACACGCAcaagTATGGTTTTGCCCCAAAAGGTTCTTCTGTAGTGCTGTACAGTGACAAGAGTTACAGACATTACCAGTTCTTCGTGGCCCCAGACTGGCAAGGGGGCATCTACGCATCTCCCTCCATAGCTGGCTCTCGACCAGGAGGCATCATTGCAGCTTGCTGGGCCACCATGATGCATATGGGGGAGAAGGGCTACGTTGAGGCCACGAGGAAGATTATTAAAACCGCACGGTTCATTGAAGCAGAAGTCCGCAAGGTGGACGGGTTGTTCGTATTTGGCAAGCCTGAAGTCTCTGTTGTGGCTCTGGGCTCCAAGATTTTTGACATTTACCGGTTATCAAATGCCTTGACCTCGAGGGGTTGGAACTTGAACACACTGCAGTTTCCTTCAAGTATACACATCTGTATAACACTGCTGCACACAAAGCCCGGCGTCGCTGATAGGTTCGTCAAAGACGTCCGAGAGTCGACGGCAGTTATCATGAAAAATCCCAAAGAGAAAACCACTGGAATGGGAGCCATCTACGGCATGGCACAGTCGATCCCCGATCGCTCAATGGTGACCGAGATCTCTCAAGGTTTCCTAGACTGCCTCTACAGCACAGACCTTCCCTCCACAGAAAATAAGCACATGAACGGCACCTCCAAGACTCACTGA

Function

GO: NA

KEGG:

id description
K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 140887 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 148558 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 212042 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 526122 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 603715 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 520508 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 524420 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 551679 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 587277 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1825863 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003212 mRNA upstream 13070 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003207 mRNA upstream 51849 14602133 ~ 14605548 (+) True AMCG00003207
AMCG00003208 mRNA upstream 58744 14595659 ~ 14598653 (+) True AMCG00003208
AMCG00003210 mRNA upstream 64832 14571728 ~ 14592565 (+) True AMCG00003210
AMCG00003211 mRNA upstream 93978 14556894 ~ 14563419 (+) True AMCG00003211
AMCG00003218 mRNA downstream 71791 14737354 ~ 14765347 (+) True AMCG00003218
AMCG00003217 mRNA downstream 122562 14788125 ~ 14800222 (+) True AMCG00003217
AMCG00003216 mRNA downstream 143055 14808618 ~ 14826815 (+) True AMCG00003216
AMCG00003221 mRNA downstream 213185 14878748 ~ 14886460 (+) True AMCG00003221
AMCG00003225 mRNA downstream 311136 14976699 ~ 14987925 (+) True AMCG00003225
TU177906 other upstream 51960 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 368655 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 472754 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1546763 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1774399 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1888448 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3010716 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 4001204 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4870130 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4953318 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile