RNA id: AMCG00003210


Basic Information

Item Value
RNA id AMCG00003210
length 6756
RNA type mRNA
GC content 0.41
exon number 23
gene id AMCG00003210
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14571728 ~ 14592565 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAACAGTAGGTAGTATTAAACAGTTGACCAGACCTAAACTTCACACCACGGGCTCTCAGGTTTCCTTGGGGAGGCTCACACTTGTTGACATCAGTAAAGCTGAACTTTTGCATTCTCATTCTTGGCTCTTCTGTTACTTCTCTGTGGGGTTGCATTCATCGAACAGCAGGCGTGAGCTAGTGCTTTCATGATGAGCCTGTGACTCTTGTTGGCGTGACTGTGGCCCTACAGCGAGACATGGCCGTATGTTTGTGGAGCCCAAGCCTGCTGGGACTGGCCCTGGTGACTGTACTGGGCTTCTGTGATGGTCAGCAGGTCTCCAGCTCCTGCTCCAGTAAACAACTGGCCCTGGACAACCTCAAGGATACCGTGTACTGGCCTGCCCCGAGCAATGACTCTGGCCTGGGCCCCCTCTCCAGCTTTGTCCAGTCCTTTCTGGGGACTGTCCAACCCAACCCCTTTCCTAAAGTGATAAAAGACACCACTTTAATCACACACAAGGAGACCACACTGAAGATACTGCAGTATGAGGTGGGATTTTTGGTGTGTACCGCGATCGGGGTCCTCTTCATCGTGCTCGTCCCAGTCGTGGGCTACTTCTTTGCCTGCTGTCGCTGCTGTGGAAACTGCGGTGGCAGGATGCACCAAGAACAGACCAAGAGCATCCCCTGCAGGCGCCGATGCCTGTACCTGGCCACTGTGGTGATCACAGCCATCTTACTggtGGGGAATATTTGCATGTTCTTAAGCAATGCAAAGTTTACAGTGAACTTCAATCAAAGCCCGGAGGTGTTCAATAACACAGTGGACAATTTGGACACATTCGTCACAACGGTCCCTCAGCAAATCGACACAGTGGTGAATGAAAGCTCCTCTGCCGTGAACGCAGTCCAGAAGAACTTGGATGATATTGGCCCTCTACTGGGCAGACGGTTGCAGCAAGTCCTGAACACTAGTTTCCAACTGGCGCTGAATACGGTACTCAACATTTCCCAAGAGCTGAACGGTGCCAGTTTCCAGGTTGGAAGGCTGAACCACACCCTGCAGAGTCTCCAGTCCAAGCAAGTGGAGCTGCAGAACAATTTCACCAGCCTGATCGGCCAAATCAACAGCACGCTGCAGAAGGTGAATTGCACCAACTGCAGCAATTTTTTGTCACAGCTGGAAGGCCTGACTTTTGACCTGGACTTCAATGGGATCTCCCAACTAAACGAGCTGCAGTTGGTGTTGAAGAGTGCGGAGCAGGCTAACCTAAGCTCTGCAGCAAATACTGGCCAGGACTTTTTGAACAGTATTCCACAGAAAGTGACCGAGCAGAGCAACGACATGGTAAACGAGTCGAAGAAACAGCTGCAGGAAATTGAGAAACAAATCTCCCAGGTTTCCAAAGACATAGACCTGCACAACCTGACTTTCATCTCTGAAGATCTGCAGAAAGTGAGGAAAGAAGCTGGCCAGTATTTcccagatattttaaaaattgacAACTACAGGTGGATCGCAGGTTTGGTTCTGAGCTCTGTGGTTCTGCTGGTGGTGGTGTGTAATATCCTGGGCCTCCTGCTGGGCCCAATTGGACTGAAGAGCAGAGCTGACCCCACTCAGAGATCGGGCATGGCGGACTGCGGGGGCATGTTCTTCATGGTTGGTGCTGGCTTCAGCTTCCTATTCTCCTGGCTCTTTATGCTGGTGGTGCTGATCCTGTTCCTGGCTGGGGGGAACATCTACACGCTGGTGTGTCGGCCCTGGGGGAaccaggagctgctgcagTTGTCTACAATTTTGGGCGTGAAGAGCAACCTGACCTTCACAAAACTGTACAAGGACTGTCATGACAACATGTCTCTGTGGAAGACACTGCACCTGAGTGAGCTGATCGACCTGGACAGCCTCCTGAATGTCAGTACGCCGTATGAATGTGCCACTGTTTACCATCCTGccctccccatctctccacAGTACACCGGGCAGATTGAGGCAGCCTTTGACATGGACAACATCACGCTGCCCCCAGTCACTCTGCTGGGTGCCGCGGCCCGCAGTCAGCTGACGAACATGTCCAACATGGCAAAGCATATCGACTTCACCAACGTCACCCAGAAGAATGACCATGGTGTGAAGAGTGAGCTGCAGAATAATGCATATGATATGAGGCGTCTGAATAACTGGACCCAGACAAACATCACGCCACTCCTGGTTGATCTGAACAGCATCGTCACGAATCTGAGTGCCTTCTCTTCAGGGATTCCTGGAATGGTGAACAATGTAGTGAGTGAAGTGGATAACGCTCAGACATTTATAAATACCAACACTTCGGGAGTCATCAAAACAGAAAGTAAAGCATTCCTAAACTGTCAGATCAGATACTTTGAGACGTATGCTGACTGGGCAAAAACAGCTATCACTCAGGACGTGGGCCGCTGCAGACCTGTGGCCGACGCGGTGGATGCAGCTGAGGTGGTGATGTGTTCATACCTGGTGGAAACCATGAATGGCTTCTGGTTCAGTCTGGGCTGGTGTATGGCGTTCCTCCTTCCCAGCATCATCCTGTCCATCAAACTGGCCAAGTTCTACAGGAGAATGAAATACACTGACGTCTATGAggaccacaTCCCAATGACTGACATGCCAAGAGCTGTTGTGAAGAGATAGCGTGAGGGAAAACTGGGAGAGGCTGCAGGGTGAGAGGCGACGAGGGGCCTAGATCAATCTTGGATTCCCCAAATACCCCCCCCGAGACTAAAAAGCATGTTACTCCCTGGCTTCACACTAAAACAGAATGCCACTCTGTACAGCTCGGGTACATCACAcctatatggcaagccaaattatcatttagagatatcttcaattgcatttcaagatatctttaaataatgtacagatatatctaaattaatttgagatgTCATTTATctccatttacagatatctaaaatcaatgtaaagatatcttgaatacatttaaatacattttgagatatctgcaaataatttcaagatatctttaaatgacttcctgtatgctgagattatcacttcctgtttactctTTCAGGtacatagaaataaattaacatgtgAACGggagtgataatcttgggctacatacaggaagtcatatTTGCAGATTGCACATATCTCtaattaatttcaagatatctctaaatatgtaaagatatcttaaatacGTTTACAGATTTCtttgaatatttaaagatatcttgaaatgcagttATAACTTGGCTTCCTATACACCTAAACCATGATTCATTTCATAGACCTCTCCTTGCTCCCAAATCTTCTACATCTGTATACATTAACTaaagggatttttattttgacgTCAGGCTGTCTGGAATTCCAGTGggaaataaaatggtaaaactACCCACACACTGTTTAATTCCATAGTCAAGGAGATTACATACACAACTGTACTGTAGTTGCAGTTTTAAAACTATGGTGGACATAGTTCTAGAACAGCTCCAactatttgttttactgtagtgGCTGTGAGATCAGCAAAAATGACTggatttccttatttatttctcGGCAAACGTCCTTATCCAAGGGTGACTCAGAATTTACAGTTATAAGATCAGTGCTGAAATATTTCCAACAATCTGTACTGAAAGAACAATactgtaaattaatcaattttctcTAGTTTATGAACTGCAGTACTTGACTATAGTATGTCTGCTAATCAAGAATTGTCTCACTATCAATCTGCCAACATGCCCTgacatttgcattgcattccTAACAACTGTGTAATTGAAAgcattttatatgtgtgtgtgtacgtgcaAAACAGTTCCAAatgacagaatatttttttgattttgcttgtatttattttttatggtttgaTACCGTTTGTCTGATTCTGTTTTGAACGACTGCAGGTGTGGTTTCTTAAAGCACAAGAAGAAAATTATCTCAGTGGTTCAACAAACACTGAATGTACTGTGAGGAGACCAACATTGTGTGAAGTATTGTACTAAACGCATAGCTGTGAGTGCCTTACAACCACCATTAGAAATGTCAATTTAATGAGgatttaaacactttatttttcgTAAAGAACATAATTTTCGGAACTTTTGATAAATTTATGATTgcactttttaataatatattttttgatactTTTGGTGGAAAATGCTTGTCTGAACccttttaatatgtatattgacATTAATGTGAAGTAAAGCCATAAATTATTCTGACTTTGATGAGAAATAGTTCAAACAGAAATATGTCCTTTGTTTTCAGATCACCATTGATTGTGCTAAATTgggtaaatgtatatttaattcataCTCTGTTTATTCCACATAAAGATCAGAAgacttacatttgtaaagtTTTGTGCATTTCAGTTGTGTCTTGACATTCCTGGTGAACCCTGGCTTAATTTATATAGACCTTTTTGAATCACTACATTTTAGAGGGctgcatttagaaaataaatctccagAGGGCGCTGTAGACTTAATATAGATCTTAATTTTTAGCCAATGTAGGAATCCACAAACTTggtcataataaaatacagcattgCATTATTGGTACAGCTACAGATGTGCTCTCATTTACTTCATTAACCTGATTGACACGATCTGTAGCCAGTGAAGactccaaaaaaacaacaacggaAGGACGTGGCTCTCCTGGACCAGAGCTGGAATATGAAAAGCCAATACTGAGGCCTCCTGGAAGATCTTCCTGTCAAGGACTAAAAACAGTCCACCTCATATTTAGTGTCTCCTGACGAATCTGCCAAAATCTACATGGATGCAATGCTGCAATTTATTAAGCATCTACATATAGCCAGTttatctttctttgtttttcgtTTGTTGATGCAGATTCAGCACTGTTTATTAATTGTACTGGTGATTTGttctttttgctttgctttccatTTAATATTTCTGATAGAAACACAGACAAAGCCTAAAAATTATACTGccgaaataaatacattcaaatcaCAGGTACGAGATTAAGAGTTCTCTCAGTGAGTACATGCATACTCTTGCCTAGAAAcacttttgtatatatatatttacataaaccaAGGTTCACTGTCATTCATCCTTTCCAAAACAGAAAGGGAGGGGGGTCTGAGCTCTTCATACCTTTCCTGTCTCCTGTTTGAATCAGTTTTGCAGTTGTTTGTAATAAATCAGGTTTCATTGTGACGTTGAACGCACTTCACCTCACACAGGTCTGACATTTCTGCAGGTATGAGAAGGAACTGATATTTTAGATGTATAACTGTTGGGGGATTTGCTTTCAGCATTAATCTTGCTCAGATGTAACTCCTTCATGAGCAGACAGGCCATTTGACTCCCATCTGAATCTAAATTTGCTTACAAAGCATATAGAAATGAAATCATTGTGATGtgtttcatataaataatagtCAAACCTTTTTTGAGGTTTACTGAAAAGCTTGAGTTTGATTAGAATTTAGTGTGACAAGCTGACAAATTGCCTCTAACTTGACGGGACTTGAAACATTGGGATTTTCATTTCAAGATCAGTCGATTAGGTTTTCTGTGAGTCTGATGACTTGGTAATTTGAAGGATTATAAAATCCATCTCCCattgttttgcagaaatgcCCAAATGCTTCCAGTCTTTACTGCCTTTTTGTCCCTTCAGTCTAAAGGATTAGAGTCTCCTTTCCTTGTCACCACCCCCTACACATTCACCCCGGATCCTGTCTGAACTTGCTGGTTATACAAGTAAGACGGAATGCAAGAGGATGAGTTTTTCCTTGGGGTCGTTTTGGTAAAGCACTTGATATCGCATTTCCCTATATAACACCACACACAAATTGGCTATTGTGGTGCTGTAACCTTGAAATGACACAGATGTTCCTCAGTTTTGTTTCCATGGACGTCTGTATTTTTTGGCATTCGTCATATAAACATCGCCTTTAGGAAATCCTTTATATAAGTGCTGCTTTTATAGCAAGGGATGAGGTTATAGGTGAAGAGAGGCAATTATTAATGCGGTTACTTCCCTGTGTATTGGACTAAAGAGGCATTCTAGAAAAATTAGGCTATTAAGTTGTTTAATGTTCATGTCATTCAAAAAAATGGGAGTCCTTGGCATATGCTTCTATGAGTAGCATTTATagggttaaatatatatatagcaattgagataattcttttttttttttttaatcatggtGCCAACTGCCAGTACTGATTTACTGTTATGGAGTTTTGgtgtatttaataaacataGACACATACTTCTAATTTTATGTTGCatgttttcattgctttattatAGAGTCATGCCAGCAACTTTCTATTCATTAAATCAGAAATTATAGAGAGACATTTCCAATGCGGTTACTGATCTTTAGCTtcaaaaacactacaaataaaatagtccAAAGTCACTCACGCAATCGAAGATCAAAAAGATGATGTCAGCTGAGTCCATATACCTGGGTGACTGTCTACCCTCCACACGAAAGAAACAACAGCTCCTTCAGTGTTTCACAATCTGAGGTGTTGCCTCCTGTTAATTTTACATAAGGTAAAAGCTAAAGTTATGAATAAAATCATGGATAAGTCATCATGGACTACTTAATGCCCAGGTTCTGGCAATCCTATCATTTTTTTATAACGGACATATTCTGAAAATGATTCCCATACATTAATTATTCTCACCGGTACaagatttatcttttttttttatcaatggTTATTGGCAT

Function

GO: NA

KEGG:

id description
K15602 PROM2; prominin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 55218 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 62889 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 126373 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 440453 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 518046 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 593506 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 597418 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 624677 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 660275 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1898861 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003211 mRNA upstream 8309 14556894 ~ 14563419 (+) True AMCG00003211
AMCG00003203 mRNA upstream 80123 14482069 ~ 14491605 (+) True AMCG00003203
AMCG00003198 mRNA upstream 112250 14456741 ~ 14459478 (+) True AMCG00003198
AMCG00003202 mRNA upstream 116205 14445933 ~ 14455523 (+) True AMCG00003202
AMCG00003197 mRNA upstream 134143 14412751 ~ 14437585 (+) True AMCG00003197
AMCG00003208 mRNA downstream 3094 14595659 ~ 14598653 (+) True AMCG00003208
AMCG00003207 mRNA downstream 9568 14602133 ~ 14605548 (+) True AMCG00003207
AMCG00003212 mRNA downstream 51044 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003209 mRNA downstream 64832 14657397 ~ 14665563 (+) True AMCG00003209
AMCG00003218 mRNA downstream 144789 14737354 ~ 14765347 (+) True AMCG00003218
TU177803 other upstream 282986 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 387085 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1461094 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1688730 12878685 ~ 12882998 (+) True AMCG00003141
TU177286 other upstream 1831961 12730731 ~ 12739767 (+) True G140939
TU177906 other downstream 8752 14601317 ~ 14605437 (+) False AMCG00003207
TU178303 other downstream 1961446 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 3083714 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 4074202 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4943128 19535693 ~ 19537091 (+) True G142172

Expression Profile