RNA id: AMCG00003213


Basic Information

Item Value
RNA id AMCG00003213
length 750
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00003213
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14631357 ~ 14632106 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCACCCAAAACAAACTGCTCTCCACCTGGAACACGGGAGTTTTACTTTGGGATGCCCAAAGATGAAGCtacattattaaaatttgaatctCCAAGCTCGTCGTCCACCTCCACCTCCGCGTCCAAGTCCATCCCAGACGACCTGACAGAAAGCTTCCAGTCAGGGGACGACCCAGAGGAGACGGGGGACTCCTTGCTTAGCCCACCCCGGGGAACCCAGGAGAAAAGGCAGAAAACCAAGAGAGGGCGATCCAAAGCAAAACCAGAGGGCTTGGTGACAAAACAGAGGAAGAACCGCAGGGTGAAGGcgaatgacagagagagaaaccgCATGCATAATCTCAACTCCGCCTTGGACGCCTTGAGAAGCGTCCTTCCCACTTTCCCCGATGATGCCAAACTCACCAAAATCGAAACCCTGAGGTTCGCTCATAACTACATCTGGGCCCTAACCGAGACACTGAGGATGGCAGACCAAGGTCGGGTGATCCCAGGCCAGCAGGAGGACAGAGAGGGCTTCTTCCCAATCCCAAGCTCGTGTATGGTGGAGCTAGCCAGCCCGACCAGTGTCTGCTCCTCGGAGTGGGACTCGTCGGCATACTCGCCCTCCTCCCACGACCCCGGGGAGCACAGCCCGGACAGTGCGGTGGAAGAGGCGTTTCCTTGCTATACGAGTCACCTCAGTTGTATCACCAGCATGCACAACAGCCAGACTAAGCACAGCACTTCATTTCCagcatacatttaa

Function

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048884 neuromast development biological_process
GO:0031103 axon regeneration biological_process
GO:0071698 olfactory placode development biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0048918 posterior lateral line nerve development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0007413 axonal fasciculation biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0021772 olfactory bulb development biological_process
GO:0005515 protein binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000989 obsolete transcription factor activity, transcription factor binding molecular_function
GO:0070888 E-box binding molecular_function

KEGG:

id description
K08028 NEUROG3; neurogenin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177857 lncRNA downstream 184852 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 253044 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 257188 14373967 ~ 14374169 (-) True G141372
TU177763 lncRNA downstream 500291 14124884 ~ 14131066 (-) True G141319
TU177747 lncRNA downstream 567186 14063800 ~ 14064171 (-) True G141305
TU178020 lncRNA upstream 27313 14659419 ~ 14659991 (-) True G141520
TU178079 lncRNA upstream 521910 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 531848 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 585368 15217474 ~ 15217807 (-) True G141583
TU178210 lncRNA upstream 1356829 15988935 ~ 15992678 (-) True G141681
AMCG00003204 mRNA downstream 99725 14516169 ~ 14531632 (-) True AMCG00003204
AMCG00003206 mRNA downstream 118552 14499293 ~ 14512805 (-) True AMCG00003206
AMCG00003205 mRNA downstream 135315 14490784 ~ 14496042 (-) True AMCG00003205
AMCG00003200 mRNA downstream 151421 14472344 ~ 14479936 (-) True AMCG00003200
AMCG00003201 mRNA downstream 219431 14405461 ~ 14411926 (-) True AMCG00003201
AMCG00003214 mRNA upstream 37309 14669415 ~ 14674342 (-) False AMCG00003214
AMCG00003215 mRNA upstream 44601 14676707 ~ 14773565 (-) True AMCG00003215
AMCG00003220 mRNA upstream 200573 14832679 ~ 14849623 (-) True AMCG00003220
AMCG00003219 mRNA upstream 223984 14856090 ~ 14878016 (-) True AMCG00003219
AMCG00003222 mRNA upstream 256076 14888182 ~ 14915336 (-) True AMCG00003222
TU177540 other downstream 1201033 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1201033 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1751936 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1776016 12851021 ~ 12855341 (-) False AMCG00003144
TU178022 other upstream 37366 14669472 ~ 14674420 (-) True AMCG00003214
TU178070 other upstream 449549 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2115955 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4911542 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4920765 19552871 ~ 19554112 (-) False AMCG00003320

Expression Profile