RNA id: AMCG00003214


Basic Information

Item Value
RNA id AMCG00003214
length 1261
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00003214
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14669415 ~ 14674420 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTATCTACTTTGCACAATGGCGGGGAAAGCACAGAGGCTGagccaggaggagagagaccagCTCCTTCCACATCTCAGGAATGCTCAGTGGACCGAGGTGGTGGGGAGGGATGCCATCTACAAGGAATTCCTCTTCAAAGACTTCAACCAGGCTTTTGGCTTCATGTCTAGGGTGGCTCTTCAGGCTGAGAAGATGGACCATCATCCAGAGTGGTTTAATGTGTACAACAAGgttCAGATCACTCTGAGTACACATGACTGTGGAGGACTTTCTCAACGAGACATCACCCTCGCCACCTTCATCGAACAGGCAGCCGTTTTTTAGTCTGCCCACATGAGACATGTAAACTCAACCCAAACAAGCCAAAAAGCTGTTCATTAAATGTTGTAGTGATTGGTAATAATTACATATCTGGGACGAGACAAACTGAGTGATCACAAGTCTGGGCTTTCAACCCTTCACAAGCAGTGTTAAAGAAATCCAGTGATCATATGAGCAAAGACAGAAACCAAGTATCATTTCAAACTCGTACTGTACAATGTGGGGGTTTTGGAGTTTTTGTAGAATTATATCCTTTTCAGTATTGATTTTGTGTGAAAAGTCACATCATACCAGTGCCTGCTTTGAGAAAGACTTGGCCAGTTTGATTATATTGAGGAAAGGGGCAAAAACTAATCTATAAACTGCATCATTGGACAGAAAACAGTACACAAACTGTCCACAGGAGCAACAGCTGGTGAAGTAAATATAATCTGGTaacaattatttacatttcaaacaatatttaactatttaagagcaaattaaataaatgtcttgaaATTGGGGCAAAGCAATTGGTGGAGAAATAACTCTGCCGCTTGGCTAGCTGTTATCAGTCACAAGATTGGGGAAgagtgaaaaaaacacaaattttgCTCCCGAGCTGCTGCTGTcaataagtaatacaaatataatttgaatgaatGCATTCAAGGCAGACAGAATGGTTTCTGCACATTAAAAAGCCTGTGTTAGAAACCCACATACAAGTCTGTTACTCATAGAAACAGACCAATAAGTAAATATCTTACCGTTATCTGCATTCCAATGCTTTCaaccaaaatgtaattgttccaTTTAGGTAAGTTATTAACTTGGGTATTTTCCAGTGTGccttattttgaataaatgttttgagtGATACAAACCTATTTCAGTGTTCATTTTCTTAAAACTAAACCCACAGAAATgcttaaataaagaataaactgTGCCG

Function

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178011 lncRNA downstream 331 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA downstream 9424 14659419 ~ 14659991 (-) True G141520
TU177857 lncRNA downstream 222910 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 291102 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 295246 14373967 ~ 14374169 (-) True G141372
TU178079 lncRNA upstream 479674 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 489612 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 543132 15217474 ~ 15217807 (-) True G141583
TU178210 lncRNA upstream 1314593 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 1333721 16008063 ~ 16061038 (-) True G141704
AMCG00003213 mRNA downstream 37309 14631357 ~ 14632106 (-) True AMCG00003213
AMCG00003204 mRNA downstream 137783 14516169 ~ 14531632 (-) True AMCG00003204
AMCG00003206 mRNA downstream 156610 14499293 ~ 14512805 (-) True AMCG00003206
AMCG00003205 mRNA downstream 173373 14490784 ~ 14496042 (-) True AMCG00003205
AMCG00003200 mRNA downstream 189479 14472344 ~ 14479936 (-) True AMCG00003200
AMCG00003215 mRNA upstream 2365 14676707 ~ 14773565 (-) True AMCG00003215
AMCG00003220 mRNA upstream 158337 14832679 ~ 14849623 (-) True AMCG00003220
AMCG00003219 mRNA upstream 181748 14856090 ~ 14878016 (-) True AMCG00003219
AMCG00003222 mRNA upstream 213840 14888182 ~ 14915336 (-) True AMCG00003222
AMCG00003223 mRNA upstream 288977 14963319 ~ 14973599 (-) True AMCG00003223
TU177540 other downstream 1239091 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1239091 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1789994 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1814074 12851021 ~ 12855341 (-) False AMCG00003144
TU178070 other upstream 407313 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 2073719 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4869306 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4878529 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4881101 19555443 ~ 19563278 (-) False AMCG00003320

Expression Profile