RNA id: AMCG00003215


Basic Information

Item Value
RNA id AMCG00003215
length 606
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00003215
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14676707 ~ 14773565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTCTAGATCAGATCAAAGCACAAATTGCACTGGGGAACAACGCAGAGTGCCGGGATACGATGAGTATCGACTAGTAACGGGCTGCACCGAGGGCTCGTACAGTCCCTCTGTGCTCCGTTCCACTGCTAACAAATTTGGCAAAAGGGAGGAGATTCTGATGAAGATGGCTGGGACTGACACCGCATCCTCAGGAGTCATCAAACTGCTGGACTCTTTTGAGCTGCCTGACGAATACCTGCTCGTCCTGGAGCGGCCTGAGTTATGCCAGGACCTTTACAGCTATGCTGGGGACCAAGGAAACCACCTGCAGGAGACTGAGGCCAAGAGGTTCATGAAGCAGCTGGTGCAGACTCTACAGCACTGCCATGAGAAAGGAGTCCTGCACCGAGACATCAATACTATATCTTTGGGAGTTCTGCTCTTTCACATCAACTGTGGGGATCTTCCCTTCAAAACAGAAGAGGAGATCATACATGGTGTGCTGCACTTCCCAGCAGATGTCTCCACAGATTGCCAGAACCTGATACGTGGCTGCCTGGCCCACCAACCAGAGGACCGCCCATCCTTGGAGCAGATTCTGCTCCATCCCTGGATGTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178011 lncRNA downstream 7623 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA downstream 16716 14659419 ~ 14659991 (-) True G141520
TU177857 lncRNA downstream 230202 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 298394 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 302538 14373967 ~ 14374169 (-) True G141372
TU178079 lncRNA upstream 380451 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 390389 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 443909 15217474 ~ 15217807 (-) True G141583
TU178210 lncRNA upstream 1215370 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 1234498 16008063 ~ 16061038 (-) True G141704
AMCG00003214 mRNA downstream 2365 14669415 ~ 14674342 (-) False AMCG00003214
AMCG00003213 mRNA downstream 44601 14631357 ~ 14632106 (-) True AMCG00003213
AMCG00003204 mRNA downstream 145075 14516169 ~ 14531632 (-) True AMCG00003204
AMCG00003206 mRNA downstream 163902 14499293 ~ 14512805 (-) True AMCG00003206
AMCG00003205 mRNA downstream 180665 14490784 ~ 14496042 (-) True AMCG00003205
AMCG00003220 mRNA upstream 59114 14832679 ~ 14849623 (-) True AMCG00003220
AMCG00003219 mRNA upstream 82525 14856090 ~ 14878016 (-) True AMCG00003219
AMCG00003222 mRNA upstream 114617 14888182 ~ 14915336 (-) True AMCG00003222
AMCG00003223 mRNA upstream 189754 14963319 ~ 14973599 (-) True AMCG00003223
AMCG00003227 mRNA upstream 236456 15010021 ~ 15030801 (-) True AMCG00003227
TU178022 other downstream 2287 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 1246383 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1246383 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1797286 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 1821366 12851021 ~ 12855341 (-) False AMCG00003144
TU178070 other upstream 308090 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 1974496 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4770083 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4779306 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4781878 19555443 ~ 19563278 (-) False AMCG00003320

Expression Profile