RNA id: AMCG00003216


Basic Information

Item Value
RNA id AMCG00003216
length 6285
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00003216
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14808618 ~ 14826815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCAGCCGACGAGCCGCATCTTGCCCGTTTCCCGGCGCTGCCACTACTTCGCTACATTGTCATCCACGTTGGCTGCAGGGCATCTTCAGACAGCACCCTGTTGTTCATGAGTTTCTCAATCTTTATTTTGCTGACTAAGGCTGTGGGATCACATGGACTGTTTTCTTCATCATGTTGCTGTTGCTAGGTGACTGCTGCAATAAGCGGGAACATTATACTCTTAACCCGGATCCCCAGGAACAGAATTCAGATGAGCCGGTGTTTTACTTCGCCATGACTAACCTTTGAAATTGTGGactgtgggattacatttgcattgttgTGGTAACCTTGTTCACCTGTGAGTTGCACAAGTACTTCCAATTTAATGATCAAATATTGTGTATAGCTTACCATTTTTCTTAGAGGTTTGAATAAGGCATGTGGATAGTATATGTGATTTCCCTTTTACAGCATTGGTGTTTTATACTGTGCAGCGCGGTTTTCCTGGGTTGTGTCAGAAATAATTGTTGATCATGGAGTGGACGACGGGTGCGTACAAAGAACGGCACAAGCTATAGCTACTTTAGTCCTAAAGCACTTGCTCTTTAGTCAGTCCTCACTCTTGTAGATTGAATTCACTGACATTCTTGGTTGCACAAGGGGAAATTAAGTCCTCTTAAAGGTATTTTCCAGCAGATTTGGGCCAGAAATGCCAGGTTTTAGGCTATAAAACGGAGTACTCTTCACTATGCCTAGAAGAAGCCTGACCCTGCAGGGCCGGATTCGCTGGCTGCTCCTAGGGATCCTTCTCTTCCTCAGCCTGGTGCTGTTCACCTATTTCCTCGAATGTACCCCTCCTCCCAACATCAGCTTGGCTCTGTCGGGGCCTGGGGTTGAACCGTATGGCAAAGAGTACTACCAGGCTTTGCTTCAGGAGCAAGAGGAACGTCACCTCAATAGAGCCGCCAGCCTGAAGCGACAAATCGCACAGCTGAAGCAAGAACTCCAGGAGATGAGCGAAAGGCTGAAGTCCCTGCAGGACAAAAAAGGGACGGTGCCCCAAGGCCACATAGGGAACAAGGACCAGGAGCCCAACGACCTCCTGGAGTACCTCCACTCGCAGATCGACAAGGCCGAGGTCAGCACCGGCGCACGGCTGCCCAGCGAGTACGCTCTGGTCCCCTTCGAGAGCTTCACGGCCACCAAGGTCTTCCAGCTGGAGATGGGCTTAACCAGACACCCCGAGGAGAAGCCTGTGCGCAAGGACCGCAGGGACGAACTGGCCGAGGTCATCGAGGCCGGCCTGGAGGTCATCAACAACCCCGACGAGGAAGATGGGCAAGAGGAAGATGGCATTCCCATGCAGAAGCAGGCGTACACCGAGGTCGACTTTGTGGAAGGGCTGTACCGCACAGAGCGAGATAAAGGCACCATGTACGAGCTGTTCTATCGAAAAGAAGACGCCGATGATTTCCGACACGTTACTTTGTTCCGTCCGTTTGGCCCTCTGATGAAAGTGAGGAGTACTTCTGTAGAGGCTGCCAGCAGCATCATTAACATTATTGTGCCGCTGGCGGGGAGAACAGAGGCCTTCGCTCAGTTCCTGCACAATTTCAGGGAAGTGTGCCTGCAGCATGACCGCAGAGTCCATCTCACAGTGGTCTATTTCGGGAAAGAAGGTCTACTGAAAGTAAAAACTATCTTGGAACAAACAGCCAGGGAAGAGAAATTCACAGACTACACCCTGATCCCTGTGGATGAGGAGTTCTCGCGGGGAAGAGGCCTCGATATCGGAGCGCACGCCTGGAAGAAGGGCGACGTACTCATGTTCTTCTGTGACGTCGATATCTATTTCACTTTGGAGTTCCTCAACACCTGCCGCCTTAACACGTATCCAAACAAGAGAGTCTTTTATCCTGTGGTTTTCAGTTTGTACAATCCTGCCATAGTCTATGGAAACCTGGAGCTGTCTCCGCCCGTTGAACAACAACTTGTTCATAAAAAGGACGCGGGATTCTGGAGGGATTTCGGCTTCGGAATGACCTGTCAGTACCGCTCCGACTTTCTGAGCATCGgaGGCTTTGACCTGGAAGTGAAAGGTTGGGGTGTGGAGGATGTCCATCTGTACAGGAAGTACCTACGCAGTGACCTCATTGTGGTGCGCACTCCGGTCTCTGGTCTGTTCCACTTGTGGCACGAGAAGCAGTGTGCGGACGAGCTGACCCCGGAGCAGTACCGCATGTGCATCCAGTCCAAGGCCATGAACGAGGCGTCCCACTCCCACCTGGGCATGCTGGTGTTCCGCGAGGAGATCGAGTCGCACCTCCGTAAGCAAGCCTTCCAAGCCCACAGCAAGCCGGCCAAGTGAAGGGCCAAGCGCACACTCGAGGGCCCGGTGGCCTCGTACAGGCCGGAGGAGGGGCGGCGATGGTCTTCACTCACCAGTCGGCTAAGCTTTAGTGAAGTGAAGCCTTCTGAAATCTGAAACGGACTTCTATTCACTTAGTTGGACTGACATTGGACGCAGTCAGGAGGACTGGGTGGATCAGACTGACTTGGTTTAATTGGTAGGCAGCTGTGGATTATGAAGGATATTGATTATGGGCTGTGAATCCTAGCTGAAAATCTACAGAAAAGCAAtggactttgttttatttatttcattttgttttttgttgttgttgacattGTCTTAGGGTCCATTCGAATGAAGTAAAACATCTAATCATTGGCCTCTAATCACTTCTGATCCTTGAGACGATCCTGGGTGGATGTGGTTTAGAGTTCTGAGGAGAGGCTGTGGTTGAGTTCTTGGAGGAACAGTAGATGACATGTTGTCTATCAATCGAGTACTCCGTCGCACTTTTGTACAAGCAGCGATTATATTGTGACACGAGTGAATTCAGTTGCATGCTACGAAGTCCTAAAGTCCCCCCCACCATAACGGATTCTCAAATATGaattcccacttcctgttcctctGCTGCTATTTAGTGTTCTTCATTGAGCTCGAAGTTTTGACCCACAGGATGCTTCTTTGAGTGTTCATTGATTGGTGTGACAGGGTCAGTGTCAAAAAAGAATAATCCCTCTTGGTCATTAGGTATAATGATGTAAGAAATTATTTCTTTCCATCTAGAATTCAAGTAAATAATTctataaaatgcacatttatagATAATTGACAGTTAATCCTCTGTTAGCTATGTTAGATCAGGCAGTGTTTCCTCTTTTCAGACCCAGTGTATAGAACGAGCTAGTGGAAAATCTCTTTGGAAAGGGTCTGGCATAGAACTTGAATCAGTTCCGTCTAGAAAGTTATGCATGTGGGCTGGTTCTGTTGTGAATTGTTTTGTCTGGTCCCATATGTTTCACATTGGTTTCATGGACTGTTCCATGATTGAGGGACCTTATTTGCACAGATGATTTAAAGGAATTTGTGTTATTATGTGGAAAAAGCCATCCAAGTGGGATTATTCCCTCTTCTAATAACTACTTTAAAGCGAATTATTAAGACCAGGATCAGTCCTGTTTATTCTTGAATGGCagacaagaacaagaaaaaagttGGACAATTATAATAAGTTAAAAGGATGATTTGGTatgtttaaagattttttttttttttaatttatttatgtgcatCTTATTACAGCCTAATATTGTCCTGCAGGGTACCTGTCACCTATATACATATTCATGCCATATATCAATTTTCAAGACAATGCTTTGCCAAAATTATTTATGTCCTGTTTCTTCAGCTGTTAGTTAGCTAAATGTGTGGCTTTATAAAGTAATTGGATTTGTTTCCCCATAATGTTAAATCAAGCCCAAAACTAAACTGGgggtcatttttaatttatgctaataaaactaatgtaTTTTAACTGCGTTCCTTTCTTTAGCATAAACTCAAAATTATCCCCAGCTGAGGTTTGTGGTAGTTTCAATTCATTTGGCAAGGCTATGCAGGAAAAAATTGGTACCAAAAGGCACTTGAAGTGTACTTGCACCTTAGATTTTCCTGCGATATGCTAAATAGTTGACATACTTTCTCAAGTGTGGGCAGTCCTAACCTTTCAATGTTTTAGTCAGAGGCTGTTAACTTACTCGCTGCCTTATGGGGAACCGGATTCTGCTCATTCTGACCACAAGTAAAAGTTTATCccactctttatttttttatcagccACATCACTTCATTCTCTCCATTGATGTTTCGCAGTTCAGTACTGTGTGAAAGCAAATACTAACTAGGATACTTGAATAGTAAATCTGTTGGGTTCCCTTTTGCAGCCCCTCTTTGTATCGCtttataattcaaaatgcaGTATGTTTTTATAGAGGATGTATTTAATACTTCTGattgtataaaatgtgatgCCAGATATGTTGCACTGCTCTCTCTTGGTAGCGGAGTGCTGCTATAGTATTTCAAAGCTATTAATATTGCAACTTTAAAAACCAGAAAGCTCCCTCAGGTACCTGTTCAATCAATTGAATACTTATCAGGACTCCAAAATCTGTTCAAGACTAAGGGCTGAAGCGCTCAAATAAAAGTCATTAAGCAGTCGACATTGTTCTTTTCATGGTGAGGATGATGGCGATGATTTATTATCAAGTTTATAtcacataaattacattttctggagCCAGAATTGTCTCAAATGAACTAAACCAACAAGCTGAGCTCAAAAGAATATCCTCAGTGCTTCCTTTTAGCCAACcttttggtttgcttttcattttaactttcaTTTGTGTTCCATTAGAAACCCCACTTTTGAACATAACATTGACACACAACTGCAGTCACACACATGGGAAACTGACACACACTTTAAATGTTATCGAACCCTTAAATATTCAACAATCTACAGCAAACCAAAGAACATCTACCAACCTAGTTACATATCAACATAATGTAAATTGTATCACAGTTGGCTGATTTTAACCACAAATGTAATCCAATGAAAAGGATTACGGAActcattttctcttttccatcCAGAGAATGTAGCCCTGCATTTCTTAAGCATTTGTGTTTACTGGTggtaaaaaagaaatgcattgaatTATTGCCAATTGCAGGTTAAAcccatttgctgattttaaagGGTATCAGATTCTTCTGATGATTTGAAGTGtaagtaaatatatttcatatatttttaataatttatcaagggactgaaaatgtatataccCTAATGTCTTCCCTCATTGCCTCGTGTCTTTTAATTTGCATGGggttttgaaatgtacacattgGCGATAATAGGCTACTTTGAGATCTACGTCTCTCAGACATTATCACacttaagatgttttttttttttttttttaaccatagAAATACTGTGGTTGAAATTGTGATTCTGAATTCCACCCTACTATACAGACTGATAGCAGGGTGGGGGAATCCCAGTCCTCGAGGGCTGCGTTCCTTAGGTACCTTTCAGTCCGCAAATAATGAAGACCTGGAATAAACAGGTGATTATACTTCATAGACATATAATGACTacagttaagtaattaagtcCTGAGGTCAAACTAAAATTAAACCCCTGCGGCCCTCGAGAACTAGAATTTCCCACCCCTGGCCTCTAGGGTAAAACAAAACCTTAGAGGGGCAATTCTTATACTTCTGGAATTAAAGACTGCATATTGCAAACTGATCTACCAAGCTTTAGTTGCATTTCCTGCATTTACAGCCTCAAACAAATCAAACCTGATTTGTTGCAAAAGAtgattgaattatgtttttttttttttaatttccagctGTTTTGTTGAGTCCAAATGGATCAGGTGCAAGCTGCTATGTAGTTGTTGCTCTGAGACAGAAGGGAAACAGACTAATGTGTTTGGTTTCCTAAGAAACTGACAGCTCTAGAGGACCAGGGTAATGTTCAATAATTAAACTTGTGGAATCTGTGAAGATATGTAAGCTTATTCCTTAATTTACTTCTGCACAACATTGGGCCATTTATATCCAATATTAATTACCtcatggaaagccatcaacccTGAGCTAACAAGCAATGTGGCCTGTGGCATACCGTGATCTTCAGAataatctgaattattattaatttttttaagtatgtgtaTCTGTTTGAAGTAAAGCCCttcacaaatgtgtgtgtattcaaCTGcttagtttatatttatttgtttggtaaTGCAGTGCAAGATATTATTGTACAATATCTTAAACCatcatatacagtgcctatagaaggtctaccccctttcaaaatgttcaccttttgttgcctgaattaaaatgcattaaaata

Function

GO:

id name namespace
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00746 CSGALNACT1_2; chondroitin sulfate N-acetylgalactosaminyltransferase 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 292108 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 299779 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 363263 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 677343 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 754936 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 359256 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 363168 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 390427 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 426025 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1664611 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003217 mRNA upstream 8396 14788125 ~ 14800222 (+) True AMCG00003217
AMCG00003218 mRNA upstream 43271 14737354 ~ 14765347 (+) True AMCG00003218
AMCG00003209 mRNA upstream 143055 14657397 ~ 14665563 (+) True AMCG00003209
AMCG00003212 mRNA upstream 164291 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003207 mRNA upstream 203070 14602133 ~ 14605548 (+) True AMCG00003207
AMCG00003221 mRNA downstream 51933 14878748 ~ 14886460 (+) True AMCG00003221
AMCG00003225 mRNA downstream 149884 14976699 ~ 14987925 (+) True AMCG00003225
AMCG00003226 mRNA downstream 166999 14993814 ~ 14999491 (+) True AMCG00003226
AMCG00003224 mRNA downstream 175995 15002810 ~ 15008216 (+) True AMCG00003224
AMCG00003228 mRNA downstream 209136 15035951 ~ 15039764 (+) True AMCG00003228
TU177906 other upstream 203181 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 519876 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 623975 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1697984 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1925620 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1727196 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2849464 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3839952 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4708878 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4792066 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012812 True 3015 mRNA 0.45 7 NC_007124.7 25569831 ~ 25581303 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_11995593_12005292.mRNA True 1638 mRNA 0.52 7 CI01000012 11995593 ~ 12005352 (+)