RNA id: AMCG00003217


Basic Information

Item Value
RNA id AMCG00003217
length 3123
RNA type mRNA
GC content 0.50
exon number 20
gene id AMCG00003217
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14788125 ~ 14800222 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTACTTTCCACGCTTTGCAGctACATGTGCACTCTACTTCCCtcagaaaaaatactttgagaACATCTATGTGGGGCAGCTGGCAGGGACACCCATTGTTCAGCTCCATGCCATGCCGGACAATGAGTTTGAAAGCGCTCGCTTCTTCTTCTGCACGTTCTCCAGAGAGCTGCCCTACAGCCACTGGTTCCACCTCGATGAGAAGACAGGGCTGCTTTCATTAAATAAGACTCTGGACTGGAGGGACTTTGCTTCACTACCCATTAGCAGGACACCTCGAAAGTCGCTGACCTTAGAGTTTAGTTCCTCCCCAAATCCCTCCAGAGACCAGAAGTGCATCAAGCTGTACCTCCATTTCTCCAACACCACGACCACCCTCTGCAGCCAGCTGAAGCTGGAGGAGCTGTGCTTCCCAGAGGAGGACAGCAGCCCTCACATCGTGGAGAACAGACCACCGGGCGTGTTTCGTCAGCTCCGACGACTCCCGCTGTACCACCACTGTGCCAACCTCACCATCACCTACAACATAGAAGCAGACGCCTCCGCTCCGTTTGTGTTGAACAACATCACAACAGAGGTGGCCGTGACCAAAGCGCTGGACCGTGAGGAGAAGGAGCTTTACGAACTGCTGGTAAAATGCACCGTGCAGACGGACCTGCGTTTCACAGAAGTGACCCGGCCACTGCTGGTCAACAATAAGTATGTGGGAACTATGATGACAAATGACCCCTGGATTACTAAAaccttcaaaattaaaaataatttcaatgaGAAAAGGTTCAGCAACCAGGTGCGAGGGACCGTCCATGAATACAcaCTAATTCTGAATAAAAGTCTGCCAATGGCAGAGAAACGGTCATTCCAGCTGGATTATCTTGTCAATGACACATCGATACATGGCCCAGAAGGAGTAGTGATTCTTCATTTCAACATCACCATCCTGCCTGTCTCTGTCAGCTTCACCAATGTCACCTACCTGTTCACTGTGAACCGCAGATCTGCAAGCTATGCACAGATTGGTTCAGTTTGTGTGGACAACTGCCTGAAATTCAAGGGGATTAACATCACATACAAACTCGTTGCCTCCAATAGAAGCATTCCGGCGTCTGCCCAAGAATGCTTCAATGCAGTTGCTGTCGCTCAGAATCGAGAGGACACTTCAGCAATCCTTTATGTCAATCAAGCCCAGGCCTTGAGGAATCCCGAGTGTCAGGAACTGCAGTACATTGTCATGGCTCAAGGGAAACAAAAGCAGTTGCAGGCAAAGACAGCGCTTACCATCATTTTTTCTGGACCAATTGATAAGCGGCCTCTGGATAAGGACTGCCCTCTCTCTTGTGCCGAAAGTAGACAGCGAGGCGAGTGTGAAGCCTGCAGTGGCAAGGGTGCTCCCAGTGGACGATGTCAATGGAGACAGGGATACGACAAAGGAATATCATCCAACTACTCAACCTGCTCTCCCAACCTCAAGACTTGCCCAGATGGCCACTGCGATATCATTGAGAGCAAAGACAAGGCGATATGTCCTCAAGACTGCACAACCCATATCGTTGGAGGTCATGAGCAAGGGATCATGTCTGGGATCAAATCTGGCTATGGAACCTGTTACTGCTACTCGGAGAAATGCTTCTGTGAGAAGAACGATATCGTCGAGCCCATGTGTGACGATGTCTGCAAGACCGTCATTGCGACCGCGGTCCTGCTCTCCTTCATAGTCTCTGTGCTTCTGTCGTCCTACTTCATCCATCGCTACCACAAGAACTCTCCCAAGCCGCCTATCGCCTCGGCTGAGATGACATTCAGACGCCCAGCCCAGACCTACCCTATCAGCTACTCCGCCAACAACGTGCGCCGGCCCTCCCTGGACTCCATGGAGAACCAAGTGCCAGTGGACACCTTCAAAATACCTGAAGATCCAAAGTGGGAGTTTCCACGAAAGAACTTGGTGTTGGGCAAGACCCTGGGAGAAGGGGAGTTTGGGAAGGTTGTGAAGGCAACAGCTTTCCGTCTAAAAGGCAAGGCAGGCTACACCACAGTAGCAGTCAAGATGCTGAAAgAACACGCTTCTCACAGTGAGCTACGAGACCTGTTGTCTGAGTTCACCTTGCTGAAGCAGGTCAATCATCCCCACGTCATCAAACTGTATGGAGCCTGCAGTCAAGACGGTCCCCTGTATCTGATTGTAGAATATGCTAAGTATGGATCGTTGCGCAACTTCCTGCGGGAGAGTCGGAAGGTCGGGCCCAGTTACATGGGCAGTGATGCCAACCGCAACTCAAGTTACCTGGAGAACCCTGATGAGAGGGCGCTGACCATGGGAGACCTCATCTCCTTCGCCTGGCAAATCTCCCGGGGGATGCAGTACCTGGCAGAGATGAAGctCGTTCATCGCGACTTGGCTGCACGAAACGTTCTGGTAGCTGAAGGTCGTAAAATGAAGATTTCAGATTTTGGACTGTCACGAGATGTTTATGAAGAGGACTCCTATGTGAAGAGGAGCAAGGGTCGAATTCCTGTGAAATGGATGGCAATTGAGTCCTTGTTTGACCacatttacacaacacaaaGTGACGTATGGTCATTTGGTGTTCTGCTGTGGGAAATTGTGACCCTGGGAGGCAATCCCTACCCAGGAATTGCCCCGGAGCGTCTCTTCAACCTCCTCAAAACTGGCTACAGGATGGAGAAACCCGAGAACTGCAGTGAAGAAATGTACAATCTGATGCTTCGCTGCTGGAAACAGGAGTCAGACAAGAGGCCCACCTTCTCAGAGATCAGTAAAGAGCTCGAGAAGATGATGGTGAAGAGCAGAGATTATCTTGACCTGGCCGCCTCCACGCCTGCAGACTCCTTGTTGTACGACGATGGTCTTTCTGAAGAGGACACCCCCCTTGTGGACTGTAATAATGCTCCCCTCCCTCGCACACTTCCCTCAACATGGATTGAGAACAAGCTCTATGGCATGTCATACCCGAACTGGCCAGAGAAGAGCCCCGTACTGCTCACAAGACTTGATGGCACTAACCCTGTCTTTACAAGATATGCAAATGATAGTGTTTATGCAAACTGGATGGTTTCGCCTTCAACGGCAAAATTTATGGACAAGTTTgatagttaa

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0016310 phosphorylation biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0043167 ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05126 RET; proto-oncogene tyrosine-protein kinase Ret

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 271615 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 279286 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 342770 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 656850 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 734443 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 385849 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 389761 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 417020 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 452618 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1691204 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003218 mRNA upstream 22778 14737354 ~ 14765347 (+) True AMCG00003218
AMCG00003209 mRNA upstream 122562 14657397 ~ 14665563 (+) True AMCG00003209
AMCG00003212 mRNA upstream 143798 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003207 mRNA upstream 182577 14602133 ~ 14605548 (+) True AMCG00003207
AMCG00003208 mRNA upstream 189472 14595659 ~ 14598653 (+) True AMCG00003208
AMCG00003216 mRNA downstream 8396 14808618 ~ 14826815 (+) True AMCG00003216
AMCG00003221 mRNA downstream 78526 14878748 ~ 14886460 (+) True AMCG00003221
AMCG00003225 mRNA downstream 176477 14976699 ~ 14987925 (+) True AMCG00003225
AMCG00003226 mRNA downstream 193592 14993814 ~ 14999491 (+) True AMCG00003226
AMCG00003224 mRNA downstream 202588 15002810 ~ 15008216 (+) True AMCG00003224
TU177906 other upstream 182688 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 499383 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 603482 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1677491 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1905127 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1753789 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2876057 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3866545 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4735471 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4818659 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012813 True 4230 mRNA 0.46 20 NC_007124.7 25584556 ~ 25632756 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_11981083_11993407.mRNA True 3820 mRNA 0.46 18 CI01000012 11981083 ~ 11994093 (+)