RNA id: AMCG00003218



Basic Information


Item Value
RNA id AMCG00003218
length 862
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00003218
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14737354 ~ 14765347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


attttctctcactctcatGGTTTTTGTCAACTATGGAGGAGGGGGCTACTGGTTTTTTGGACACGCTCCATGGAATGTGGCCCTGGCTTTCAGCTCAATGCTGAGGAGAGGGGTGAGCCGGACGCAGCTCCTACGTAAGCTGACCTGGAGGACAGTGGTCCTGTTCCTCATTGGAGTCTTCTTCATGAACTACGGCCCCAGGGATGGCCCATGGCCGTTGGTGGAATCCTGTCAAAGACATCGTCCTGTATTGGCCAGAGTGGCTCTTCATTATTCTACTGGAGATACTTTGGTTGTCCTTCACCTTTCTCATGCCAGTTCCAAACTGTCCAGCgAATTGTATCGAACTACAGTGCCCTTTGACCCCGAGGGGGTCCTAGGCACAGCCAATTCCATTGTAATGGGTTTCCTTGGAATGCAGGCCGGCAAGATTCTGCTTTTTTACCGGAAGAGAACTGGCAGCATTCTGAAACGGTTCCTGCTGTGGGCTCTGTTACTGGGAATCTTATCGGCCATCCTTTCTAAGTGCACACGAGACGAGGGATTTATACCTGTCAATAAAAACCTCTGgtctCTGTCTTACATCACCTGTATGGGATGGTCTTCTTTCATCCTGCTTGGGGCAATGTACTTCATAATTGATGTCAAAGGCTGGTGGGGAGGCCAACCTTTCATTTTCCCAGGGATGAACTCCATCTTTGTGTATGTCGGCCACTCCCTCCTGGGCACCTACTTTCCATTCAACTGGGATCTTCAGTTTCAGGAGAGCCATGCTGCACAGCTCTTCCAGGACCTACTAGGAACAGCCCTCTGGGTCCTCATCGCCTACTTCTTGTACAGACATAAGTTCTTTCTCAAAATC

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 220844 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 228515 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 291999 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 606079 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 683672 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 420724 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 424636 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 451895 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 487493 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1726079 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003209 mRNA upstream 71791 14657397 ~ 14665563 (+) True AMCG00003209
AMCG00003212 mRNA upstream 93027 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003207 mRNA upstream 131806 14602133 ~ 14605548 (+) True AMCG00003207
AMCG00003208 mRNA upstream 138701 14595659 ~ 14598653 (+) True AMCG00003208
AMCG00003210 mRNA upstream 144789 14571728 ~ 14592565 (+) True AMCG00003210
AMCG00003217 mRNA downstream 22778 14788125 ~ 14800222 (+) True AMCG00003217
AMCG00003216 mRNA downstream 43271 14808618 ~ 14826815 (+) True AMCG00003216
AMCG00003221 mRNA downstream 113401 14878748 ~ 14886460 (+) True AMCG00003221
AMCG00003225 mRNA downstream 211352 14976699 ~ 14987925 (+) True AMCG00003225
AMCG00003226 mRNA downstream 228467 14993814 ~ 14999491 (+) True AMCG00003226
TU177906 other upstream 131917 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 448612 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 552711 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1626720 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1854356 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1788664 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2910932 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3901420 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4770346 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4853534 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile