RNA id: AMCG00003219


Basic Information

Item Value
RNA id AMCG00003219
length 5134
RNA type mRNA
GC content 0.47
exon number 18
gene id AMCG00003219
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14856090 ~ 14878016 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGAGCTGGAGTAGGTTACGTGTAATTGCCTGCTGAAAATGGCTGAGAAGAAGCAACACGGCAGCTCCAACACAAATCTCCTGTTCTCCACGGCACCGGAGTTTAACTTCAGCCTGCCCTTCATCCCTGTCAGCCAGGCCGCCGGCCCTGCGGTGCTCTCGGGAGATGATTCTGTAGACGTGGGAGAAGAGGACAGTTTTCTTGGCCAGACATCCGGAAACGCCAACCAGCCTCCAACCTTCAGCTACTTTTCCCAGTCGACAACCAGCAGTGACCCTTTTGCTTCCATCGGGCAACAGTCTTACACTTCTTCTGCACCTACTGTAGGACCGGCTGCCTCGGCCGTTTCTCCGCCCCTCACCACCGCTGGACAAAATGATTACCCAGCTGCAGCAGCCCCCCAGTCGAACTTTACCCAGCCCCCAAGTTCTCAGTTTGGAAATGCACCCTATCAGAGCCCTCAGGCTGGATACACTCCTGCGCCAAGTAGCATAGCCCCGCCCATTgcccaggcccagcagcagaTTTACAACCCCTATCGCCACACCCCTTTAACCAGCCGAGTCAATCCCTATCTAGCTCCGCCACAACTTCAACAAAGCCAAGCCCAGCAACAGCAGCTGCCTTTCCTTCAGGCTCCGCCCTCTGCCCCTCCCTCTCAGACATATCACACTCCCTCCGTTCCGTTCGCACAGGGGCAGGCCGTACCTTCCGGTGTTCGCCCTGCAGGCCCCCTGGTCCCAGCTCCTCCCATGATGCCCTACACCTACAATGTGTATGAGCCCGTTCAGCCCCACTGGTTCTACTGCAAGCAGGTGGAATCCAAGGATATCTGGTTCCCCTTCAGCCTCTTTGACTCCATCAGGCTTGAGGAGACCTTTAACTCAGTCCAGCCAGACCCAGAGAGTGTGGTCGTGTGCACGGATGGGGGCCGCTATGACATTCAGCTGTACGACCGCATGAGAACGGCGGTGTACTGGGAGGAGGAGCCGTCTGAAGTGCGCCGGTGTACCTGGTTTTACAAAGGAGACACAGACAGCAGGTTTATTCCGTACTCTGAGGAGTTCAGCGAGAAGCTGGAGGGAGAATATAAGAAAGCTGTGACAACCAACCAGTGGCACCGAAGACTGGAATTCCCTACTGGGGAGACGATTGTCATGCACAATCCCAAGGTGATCGTTCAGTTCCAGCCCTCGGCGATGCCAGACGAGTGGGGCACCACGCAGGATGGGCAGACCAGGCCCAGGGTGGTGAAGAGGGGCATTGATGATGATCACGATGAGATTCCCGATGGAGAGCTTCCTCAGGTGGACCACCTGGTGTTCATGGTGCATGGCATAGGACCCGTCTGTGACCTGAGATTCAGGACCATGGTGGAGTGCGtGGATGACTTCCGTAGCGTCTCTCTAaagctgctgcagagtcacttcAGGAAACCTCAGGAGGAGCGAGCCATCAGCCGTGTGGAGTTCCTCCCGGTCCAGTGGCACATGGCCCTGCATGGCGATGCTACTGGAGTGGACAGGCGAATCAAGAAGATCACACTGCCAAGCACAGGCCGTCTGCGCCACTTCACCAATGAAACTCTGCTAGACGTCCTGTTCTACAACAGCCCTACCTACTGCCAGACCATCATGGACAAAGTGGCCCTGGAAATAAACCGCCTCTATGCGCTGTTCCTTACCCGGAATCCTGATTTCAAAGGAGGCGTTTCAGTATCTGGACATAGTTTAGGCTCCCTTATTCTTTTTGATCTGCTGTCCAATCAGAAAGATAAGTCCCAGCCTCATGCCTCTGCCGTCCCTATGTCCAATGGTGGGAACCCTCTGGAAGGCAATAATATCAAACAGGTGGATGGTGCCAACCCAGTATTTCAGGGAAGCGATGCAGGCTGTGAGGCAACTGAGGAGGAGCATGAGGCCGAGGAAGAAGAAGAGCTTGTTTTGTCCTCTGCTCTGGATCAGCTCGGTCTCTCTGAGTATCTCGGCACCTTTGAGAAGGAGAAAATCGACACGGAGTCTCTGCTCATGTGCACTGTGGATGACCTGAAGGAGATGGGAATCCCACTGGGGCCAAGGAAAAAAATTTCAAATTTTGTGAAAGAGCGAGCCAAAAAACAGGAAAGGCGAAAGGCTGCAGCAGAGAAGGCCGTGGCAATGGAGGCTGTGCGGAGAGCCAAGCAGGAGGCCGTTCTCCAGGCCAGAGAGGAGGCGGCGGCCGCAGCTGCGCAGCTCTCCCATGCACAGCCAGACCGGGCAAAGCAGAGACTGCCCGTGGGGGGGACCATCTCATCCTTGCATGTGGATTACGACTACTTTGGAGTCGGCACTGGACAGGTCTCTGTGGTTTACCACTCATTGGACTTCGAACCAGTGAATTTCTTTGCCTTGGGCTCCCCCATTGGAATGTTTCTCACAGTGCGGGGGCTCGAGAAAATTGAAGAGAACTACCACCTCCCCACCTGCAGGGGTTTCTTCAATATTTATCACCCGCTGGACCCTGTGGCATATAGAATCGAACCCATGATTGTTCCTGACCTGGATGTAAAGCCTGTTCTCATTCCACATCACAAGGGCAGGAAAAGGCTTCACCTCGaaCTTAAAGAAAGTCTGACGCGAATGGGCTCAGATTTGAAACAGGGATTCATTAGTTCCCTGAAGACAGCCTGGCAGACCCTTAATGACTTCGCAAGGGCACACACGTCCTCTCCGCAGCTACAAGCTGAGCTGGAGAAGGTGGCCAACCAGAtcaaagaggaagaggagaagcaGGTCGATGAAGAACACAAAATGGTGGAGAGCCCAGATTCCACAAAGGAGGACGACCTCGCTGTGAAGATTGGGATGCTGAACGGAGGGAACCGCATTGACTATGTTTTGCAGGAGAAGCCGATCGAGAGCTTCAATGAGTATCTATTCGCTTTACAGAGCCACTTGTGCTACTGGGAATCTGAAGATACTGCTCTGCTGATCCTTAAAGAAATCTACAAAACGATGGGGATTTGCCCTGAACAATCGGTGCATTGATGACCATCACTGCCTGATTTGACAGCAGATcgtatttcatgtttttgtttttgtttgttttttctttatcattcGCATTTAAGTTTACTCTTCCAGATGATAGACTTATTCCcttcttaaatataaattatcattttttccttagttatttttttttatatatatataatttgtagaCTAGAGAACAAGTTACAAGATAAATACACAAGTATTTGGCCATCTGTCTTAAATTAAGAAAACCTAGCGCTATGATGAATTCCAAGGCAGGAATACTTTGATTTATTCTTGGACTTTTATATGATGTGAAGGATGCAGAGACTGAACCTGGTGGTGGTGATTTCTAAAGCTGAAAGAGATAATAAGAACTGGGATGGAAACCAAGTACTTCATAGATTTAAATattgtctatttaaaaaaaaacaatctaactCTGCTTGTGGGCCACACTAATCTCATAGTATGACAGCAGTCCTACAATAAAGAGATCATAATTTACTGTGTCtttcagtttgctttattgGATTATATGGCTGACAAATTTTGATCCAAGCTTTCTCTGTGATTTTGGctttacatacatgcatatatatgtcagtcagttttgttttattctaagCTTATGATAACTTTTAAGgcctttgcacactggatccgaaGATGCATCCGATTTGTACATGTGCGAAGAGAAAAAGTGTGCACCCCTGTCTCACCTTGCACACTGAGTCGGTCATTGTTGAACGATGGTGATGTGTCAATTTTGGAATCTAAACCAATTTTGGAATGTAAATaaattttacatacattaaaaatgacattgacatTAATGAAAAACGACAGGAAGATTGATGCACTTACTTTGAGTCCTCTGGAAAAGCTTATCTGTGTGTCTAACCACAAAGAAgtatacaacaaagcaaataaatgtacacagatgatatatggcaagctatcgtggaggagctgggcatgaatggtaCCGCTTGATATAGCTCGAATTCTAGGAAGTGGGTAAACGCagtgaaaaaacagaaatgtggcttactttatttacaaaggtttgcactttcaaataaacagtataacGTTGAACCAtgcactgtgtttgtgtctgaggTCTAGTTTTTGTGcgataaaatgttttaaagaaaccaTGGCATAGCTTGTGAGAATCACACCAGTGCAAGAAGGGGACAGACTGTATCTGGTGCAGTTTTAACAGATACAATGTGCAATGTtcttgacggacaacttttcggatgacGGACTACAGATGACTtatcggatccagtgtgcaatggCCTTTAGCCTGCGTTTTGCATATTCTGCTGCTGGGGACACTGATGAGTAATGATTTTACTGCTCCTTGTGTTGTAGGTGGCCGCCATCACCATATGTTTACTATTGCTCCCCTGCTGTATTGATGGATTTGTAGTATTGAAGTGTATTGGGGCTTCCTGCATTATCAGTAGAATATCAGGACTGTGTGAAGTAAGTATATCAATGTACGTCTGCACCAAGTTACATTgacacaattttaatttgtgttaagACTCTTGagaaataatgagaaaataatataaaaagatgAAGATTTATAGATAGCTGGGAAGCCTGAAGCTAAGATAGTATTTGTAATCAATATATTAGTTGAAATCTAGGGGGTTTGAGgcaagaaatatattaaaaaaaacaacaaaaaaaaggccCTTTCATCTCAATTTGCGAACTTGCGGCATTGTTTTTCTGCAGCACCCAAGGAGAATGCCAACCATTTGGGATTGCTTTCAGCGCAGTCCTTTGCTATTTAAAGCCTTCTTATTATGTCACTGTCAATGTCAATTGCTAGGCGACAGGCTGCCTATGTAACCAAGCACCACTCCCACTCAGTTCACGCTCACAACTGCTCTTGTGCTGTGGAGCAGCTTCGCTACCCACTCTCTTCTTCAAGCGCTGAAAGGAAAGTGTTCCGCAGAGGCAGATATATGTAACTCTCAGGCTGGTTTGATGTACATCCAATATGTGTATAGCTGCATATCTAGAAAAGTTTTGtgttacagaaaatgtttgaagtattaaaagtatttgttcAGGCCAAACGCAAGTCTcaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178011 lncRNA downstream 187006 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA downstream 196099 14659419 ~ 14659991 (-) True G141520
TU177857 lncRNA downstream 409585 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 477777 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 481921 14373967 ~ 14374169 (-) True G141372
TU178079 lncRNA upstream 276000 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 285938 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 339458 15217474 ~ 15217807 (-) True G141583
TU178210 lncRNA upstream 1110919 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 1130047 16008063 ~ 16061038 (-) True G141704
AMCG00003220 mRNA downstream 6467 14832679 ~ 14849623 (-) True AMCG00003220
AMCG00003215 mRNA downstream 82525 14676707 ~ 14773565 (-) True AMCG00003215
AMCG00003214 mRNA downstream 181748 14669415 ~ 14674342 (-) False AMCG00003214
AMCG00003213 mRNA downstream 223984 14631357 ~ 14632106 (-) True AMCG00003213
AMCG00003204 mRNA downstream 324458 14516169 ~ 14531632 (-) True AMCG00003204
AMCG00003222 mRNA upstream 10166 14888182 ~ 14915336 (-) True AMCG00003222
AMCG00003223 mRNA upstream 85303 14963319 ~ 14973599 (-) True AMCG00003223
AMCG00003227 mRNA upstream 132005 15010021 ~ 15030801 (-) True AMCG00003227
AMCG00003231 mRNA upstream 178627 15056643 ~ 15140819 (-) True AMCG00003231
AMCG00003232 mRNA upstream 271253 15149269 ~ 15163406 (-) True AMCG00003232
TU178022 other downstream 181670 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 1425766 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1425766 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 1976669 12861426 ~ 12879421 (-) True G141004
TU177333 other downstream 2000749 12851021 ~ 12855341 (-) False AMCG00003144
TU178070 other upstream 203639 15081655 ~ 15117517 (-) False AMCG00003231
TU178404 other upstream 1870045 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4665632 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4674855 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4677427 19555443 ~ 19563278 (-) False AMCG00003320

Expression Profile