RNA id: AMCG00003224


Basic Information

Item Value
RNA id AMCG00003224
length 3765
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00003224
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15002810 ~ 15008216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttctgttgataTCTGCATATGATATCTCTTTAGCCTTTTAACTAGTTTGCTTACAACCAAGAGCCCTGCACAGCAAAATCTGTGATTCTCCTCTCAGAACTCGGTTAAGTCATTCAAAACGGCCAAACGCTTTGTGATGACATGTTGGGTTCAGTTGGTCTCGCTGCCTGTGTTTGtagttgatttgttttccacttttGGATTGGAGAGGTGGTTGAATGAGGGTGCACTGATATAGACGGGTTCACCTCTTGGAAAATGACGATTTTATCCTGGTTGCCAGCTATAACGTTATTGAGtcgattttgtttatttttttattataataattgtgaaTACAAAGCTTTTCGGACTTTTTTTGGCGTTTCTACTTCACAGACATGAGGATGCTGGTGAGATGCTGAAAACCATGGAGGAATTCAGCATTTCCCATATGTTTCACAACAAGTCTTCTGTGTGGTATTACCAAACTATATCAGACAATACATGCAGGAATATGACtgtgtaacaaaacaaacaaacagactggttaaaaagcagcattttaagacacaaacagaaatgtgaagGAAGGCCTTATGCCCTATTGGGAAGTCACATGTGATCAGTGTCCCTAGGGCTTTGCAGTTTTGTATAATGGATATTTGTGATCCAAATCCTAGTCATTTGCATTAAATTATccactaaaaatatatatatttttgtggtaAATAAATGACATCTGTAGCTACATTGTAAACCAGCAGAGGGCACTCGTGTCTCTCCTGTCTCAATCCAGAAACCAACCAGGGTTTAGCTTGCCTGTGTTACTCGAGTGCAGTTGATAGAAATGAAACCTTAACTTGGACTCTATTCTATTTTGTCAGGCTGCGCTCATCTTGCTAATGCTCTTACCAGATCCCACCAGCTGttgcaaaatgaataaatgtcttCTTCCCTCACATGGAACAGTACCCCTTCGGCTGTGAGACACAATATCCCACTCGCACCTCAGTTACCCCACAGATCTTCACTGCTCAGCGGGACAGAATATTTGCCCCCTGAATAAGACCAGCTTCATTTTGGCCTGACCAAAAAAATCTGTGCTGTTAAATCAAGAACTGCTTCATTATATGGTGCCATAAAAGTATCTCTGGCTGTATTTGGTACAAATGATATTGCAGGTTGCTTGCTCGGATATTGTCATGCAATTATAGTAGGTGGTGACACAGCAACGGATACGTCAAGGGCTATTGTTAGGAGTTCTAATGTAAGGGGAGGGAAAGCAGTATGAATCACATTTTCACCTCTATCTATAATCTTATATAGTATATGTATTATTCTGTGTGTTTACTTGACTTTGAAAAAACATCATTATGAAGCTGTGTGGGATACTTCATAACTGTAAGAGGATGCTCTGGATTTTCATAGACAGTTTTGAGAAAAAACGTACATACCTTGCTTGCATGATACAAAGGCCTCGAACGTGGAAGTGTTTGTGCTCTTGGCTCATGACATCTATCCCACTGTGTTTGGCCGACTGTAGACTAGAGAAATAAACAGCGAGGCTCAATGCCAGAGCAATGCTGTAAAGGCGATGAAGGAACACTAGAGGTAACTTTAACCAAGGCAGACGCAAGGGAGCCATTGGTCAGAGTCCTTGACGGAGTAGATGGTCAAAGCAGTTTCAGAGTTTTTAGGCTGATTGGTATAGAAAGTGTTGACCCTGGCCTTGTGGGGATCAAGCAGAGTATCCTGGGACATCCTGTTCTCCATTTATAGCACATGAACCTGCTGTTTTCACTGCTGCGATATAGGAATCCATGTCATTTTAATACGTATCATAgatctgtttgttgttttctggaattgaattatttatgacCAATATGACTTTGCTCTGTACGATGCCAATAAGATTGCAGTGTAACATTCTgtaaatctgtttgtttttatgctgttgttttgttcctgtttaTTAAGGGGTATGAGTAAATCTGGAGGGCGttgtatacattattcattatagGAATGCCAGCTGACCTTGTCTCCACccagtaatgttttaaaattcatttcaaTGGTCTGATATGCTTTCAACTTCCATCACAGATCTTTTAATCTAAACTGGGGCTTGGCGCTCTCTCTCAGCAGCAGCTGTTGTTTTGAGGGAGAGTAATCCTCTTGATAGCTACTAGCACTTGGTGCCTTACAGGTTATTCGGTTATTATGCCAAATCCACTAACTAGGAAGATCTGTctagctgttgtttttgtgtgttgacTTATTCATGTGTACAGTGTGAAGCTTAAATACTCTGACTAACGTGGATTCCCACTGACAGAGCTTCCAGTCACTGAACACAGGTGCCTGTGGCAATTACATGCCATGATACGCATAACTGGGGACGGCGTCACGACCTGGGTTTGATACGGAGTGGCTCATGCAAATGAAAGACTTTGACATGAGTAAATCCAAGAAGCAGGCAGAGCTCTGTTAATCGCTCTTTAATCCGAACTCTGTGCACTTTTCCGGAGCTTCCAGCAAGTAGTAGTAGGAAACTCTGTGAGAAAGAAGTCAGGCACGTAGCACTCACAGAAAGCAACTTCAAGGAGCTGACTAGGAAGGCAGATCATGCAAGAAATTGCAGCAGGACAATCAATAGTCAGTTTAGTGTAAAATGATTtggatttgttcattttgtaaGCAGAGCAATAAAATctctatattaataattggtaaaaaggtgatttttgttttgttttataaaagaaCACATCATTGAAAATAGGAGGGAAGACTGATTTTATAAGAGATCTCCTGCAATACAAAATGCCTCACTATAGTAACCCACGGAGGTATGGGGCGCGGAGGAGGTCAAACAGCACTGGCGTCTGCATCCTGCCGAGCATCCCGGAATACCCAGGCTTCCAGGACATCAAGGTTTCAAGGAGTCTACCTTTGAGCCCCAACTCCAGCCCCGTCTTACTGGAACCACCGCCAAAGAGGAGCCCTTCGCCACCCACCCATTTCCAGAGCAATGTGGTTGTGAAGTCCTTGATTTACAAGAGCCTGAAGTGCCAGGAGGTTGTGAGCACGCAGAACCACAAACTCCCTCAGCAGGACCTGGGCAACTGGCCAGGTGGCTTCCACGAACAGAACCTGGAGGACTACTTCAATGCCAGACTGACGGAGCTGAGGAACCCGGACATGCACAAGAGGCCGAGCGGCAGGACGGGCCTGCCCCGGTACGGCCACAGCAGGCAGGTCAGACGTCGCAACAGCTGTACGGCTCTCCTCGTGGGCACCGCCACGAAAGACTACGAGCACCTGGAGAGTCGGACGCAGGCAGAGTGTGACAGCAAGGTCAAGCCGTTGAGCGTCTTTGATTTTTACAAGCGCTGCAAGATCGATTGTTGGAACAAAATCAATAGCTGGCGTGTCTTCAAGTCTTAATCCGACACACGTCTGGTTAACCGCTATCTGATCTGTCAGGTCTAACAATGCGAGAACAATCCTTTGGTATGGACCTGCTATCCCTCAAAGATGAAGGACGTTGCATCACACACTATTCTTTGaacacagcttttcttttttacttcaACTGCAAGTAAGGTTTCCTTTAGTTATGCAGTTATCtaattcttttgtttttgttttttccatgtatgaaaatgcattcatacacacatcaacattttcttttttacacaGAAGGAGTATGAAAGGAGCATCAATAATATACACCTTAACAAAAAAAGTATACGTTTCCAACAAAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 486300 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 493971 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 557455 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 871535 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 949128 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 177855 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 181767 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 209026 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 244624 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1483210 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003226 mRNA upstream 3319 14993814 ~ 14999491 (+) True AMCG00003226
AMCG00003225 mRNA upstream 14885 14976699 ~ 14987925 (+) True AMCG00003225
AMCG00003221 mRNA upstream 116350 14878748 ~ 14886460 (+) True AMCG00003221
AMCG00003216 mRNA upstream 175995 14808618 ~ 14826815 (+) True AMCG00003216
AMCG00003217 mRNA upstream 202588 14788125 ~ 14800222 (+) True AMCG00003217
AMCG00003228 mRNA downstream 27735 15035951 ~ 15039764 (+) True AMCG00003228
AMCG00003230 mRNA downstream 44126 15052342 ~ 15056226 (+) True AMCG00003230
AMCG00003229 mRNA downstream 126996 15135212 ~ 15146285 (+) True AMCG00003229
AMCG00003242 mRNA downstream 148917 15157133 ~ 15161538 (+) True AMCG00003242
AMCG00003234 mRNA downstream 155508 15163724 ~ 15167974 (+) True AMCG00003234
TU177906 other upstream 397373 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 714068 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 818167 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1892176 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 2119812 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1545795 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2668063 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3658551 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4527477 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4610665 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile