RNA id: AMCG00003228



Basic Information


Item Value
RNA id AMCG00003228
length 1002
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00003228
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15035951 ~ 15039764 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGCAAGgcGTTACTTCAGGAAGAAGATGTGAACTGCATCTGTGTGGACTGGCTAGGTGGTTCTAGATGTCCCTACACTCAGGCTGCTAACAATATCCGTGTTGTTGGAGCAGAGATTGCATATTTTGCAGAAGTTCTGCAGACCAACTATAATTATCACCCATCCAATATTCATCTCATTGGTCATAGTTTGGGGGCTCATGCCTCCGGGGAGGCTGGGAAGAGAAAACATGGCATCTCAAGAATTACAGGCCTGGATCCGGCGGAACCCTATTTTCAGAACACCCCCATTGAGGTTAGACTTGACCCCAGCGATGCCGTGTTTGTTGATGTCATCCACACTGATGCTGCCCCGATGGTCCCATACCTTGGAACCCGTAACTTTGTTGCCTGCAATCATGCAAGAGCTTACAAATACTATATTGATAGTATCAAGGAGAGAGACGGGTTAATTGGATATCAATGCTCCAATTATGAAGATTTTAAGAAGGGCAACTGTGCACAGTGTATGAATGGGGGATGTCCACTAATGGGACACTACGCCGATACCTATGAGCTTCCCAATGGTGCTGTAAACCAACTTCTATATCTCAACACTGGGGATGCAGTACCATACTCACGATGGAGGTACATAGTATCTGTAAAAGTAGCTGGAAATCAGGATGTGAGGGGGTTAATAAACATTTCTCTCTTCgcaaatgaacaaaacacaagacaacaTGAAATCACCAAgtcaTTGAGCGCAACTCTCATTGGTTTTCATGACAGAGGGAAACTGGAACCAACCAAAATGTACATCTCTGGATTTGACTCAGAAGTGAATTTGGGTGACCTGACTGAAGTGAAATTCCTCTGGGATAACAGTGAAATTAACCCTCTGCTGCCGACACTGGGAGCTGAAACCGTGACAGTTCAGAGAGCACAGGACGGAAAATTATTCCGTTTCTGTGGAAGTGGAACCGTTCAAGAGAAAGTTCTGCAGACACTGACACTGTgctaa

Function


GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 519441 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 527112 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 590596 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 904676 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 982269 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 146307 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 150219 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 177478 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 213076 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1451662 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003224 mRNA upstream 27735 15002810 ~ 15008216 (+) True AMCG00003224
AMCG00003226 mRNA upstream 36460 14993814 ~ 14999491 (+) True AMCG00003226
AMCG00003225 mRNA upstream 48026 14976699 ~ 14987925 (+) True AMCG00003225
AMCG00003221 mRNA upstream 149491 14878748 ~ 14886460 (+) True AMCG00003221
AMCG00003216 mRNA upstream 209136 14808618 ~ 14826815 (+) True AMCG00003216
AMCG00003230 mRNA downstream 12578 15052342 ~ 15056226 (+) True AMCG00003230
AMCG00003229 mRNA downstream 95448 15135212 ~ 15146285 (+) True AMCG00003229
AMCG00003242 mRNA downstream 117369 15157133 ~ 15161538 (+) True AMCG00003242
AMCG00003234 mRNA downstream 123960 15163724 ~ 15167974 (+) True AMCG00003234
AMCG00003238 mRNA downstream 134366 15174130 ~ 15178215 (+) True AMCG00003238
TU177906 other upstream 430514 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 747209 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 851308 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1925317 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 2152953 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1514247 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2636515 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3627003 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4495929 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4579117 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile