RNA id: AMCG00003231


Basic Information

Item Value
RNA id AMCG00003231
length 5589
RNA type mRNA
GC content 0.47
exon number 42
gene id AMCG00003231
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15056643 ~ 15140819 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGCGATCACCAGGGCCAACTGCGCTGTGAGGGGGGTGTCCTTGCTCAGCGCCTCTGCCAGGGTGGGAAGAACGCCACTGGCCACAATCTGCTGGGCCACGCCCTCCTCTGGGGagacaggaaacacacacagccggTCATGACGGAGGAGCCTGATGTTCGGGGACTCAGCGGGGTGGCGGTTCAAGGCACCCACAGCAACAAGAGCAGCATATCCACCCTGGGCGAAGCCTCGGTGCAGATGGAGTCGCACTTGTTGAGGGGGAGGGCACTGCAAGTGAAGGAGCTGAGAGGCTTATATTTCTGTGGAGACTCATTAAATCAAAGTACAAGCTATCAATCTGCAATGGCTAACTGTTCAAGCCACACAGAACCCTATGGAGCAGttGGCATAATGAAGCCAGGGCTGAATGCTATCCTTGGCCCGTCAGGAGGTGGGAAGTCTTCGCTGCTGGATGTACTGGCTGGGAGGAAGGACCCTGCTGGTCTGTCTGGTGATGTCCTCATCGATGGAGCCCCACAGCCTGCCAACTTCAAGTGTATTTCAGGATATGTTGTGCAAGATGACGTTGTCATGGGCAACTTGACTGTCCGGGAAAACCTGCTGTTCTCGGCGGCGCTGCGGCTCCCTACATCTATCAGCTTTAAGGACAAGGAGGAGCGAGTGGCCAACGTCATCTCTGAACTCGGGCTGACCAGAGTGGCTGACTCTAGAGTTGGCACACACCTAATCCGAGGCGTCTCTGGAGGAGAGCGGAAACGAACCAGCATTGGAATGGAGCTCATAACGGAGCCCCCCGTCTTATTCCTGGATGAGCCAACCACAGGCCTGGATGCCAGCACATCCAGTGCAGTGCTCATTCTTCTGAGAAGGCTCTCAAGAAGGGGGCGAACAATGATATTGTCCATTCACCAGCCCCGTTCCTCAATATTTAAGCTGTTTGATAGCCTGACTTTACTGGCTGCTGGGAAAATGATAGGGGAAGGCAACTTGAAAACTGTGGTGGATACACTCAGTGAGAAATACGTGGCCTCAACCCAATATCAGTCTGTACAAGATGCACTGAGGAATATCGAACACCGCAGAGGAACTAATAGAAATGGAAGGAATATGGAGTCGATCACTTATGCCACCTCATTCTTTACCCAGCTTTACTGGGTGACCAAGCGCACCTTTAAGAACCTCATTCGGAACCCTCAGGCTTCAGTTGGGCAGGTTTTGGTAAACCTTATAGTGGGTCTATTTGCTGGTGTGATCTTCTTTGGAGCCAAACTAGACTCCACTGGAATTCAGAACAGGGTGGGTGCCTTATTCTTTGTGACCACCAATCAGTGTTTCTCCAGTGTTGCAGCAATTGAGGCTTTCATTAAAGAGAAGAAATTGTTCATTCACCAGTACACCAGTGGGTACTACAGGCTATCGGCCTATTTCTTTTCAATACTACTAGGAGACCTGATTCCAATGCGGACTGTGCCTGGACTAGTTTTATCCTTAATCACATACTGGATGATGGATCTTCTCTGGTTTGCTGGTAAATCTGAACTCTGTCCCGGCTTGGATCAGCTGGCTCAAATACTTCAGCATACCAAGATATGGAATGACTACAAAATGGCAAACACAACAACCAGAGCTGGTAATTACTTGCCAGGTGTAGAACTACTGTCCCTTGACAACCCGCAGTTTAATGACAACCGTGCGTCCATTGCCGTAGTGGACGAGTCTGTGTTTCAGCGAGCAGCAATTACCCGGGAGTCCCTGAGATCCCCGCGAGGGTCTGTGGTCTCCTTTCACAACATCAATTACTCTGTCAAGATCTCTGAAAGCCCAGCCTGCAAATGCAAGACTGAAAATAAGCAGATCCTCTGTAAAATCAATGGCATAATGAAGCCAGGGCTGAACGCTATCCTTGGCCCGTCAGGAGGTGGGAAGTCTTCGCTGCTGGATGTACTGGCTGGGAGGAAGGACCCTGCTGGTCTGTCTGGTGATGTCCTCATCGATGGAGCCCCACAGCCTGCCAACTTCAAGTGTATTTCAGGATATGTTGTCCAAGATGACGTAGTCATGGGCAACTTGACTGTCCGGGAAAACCTGCTGTTCTCGGCGGCGCTGCGGCTCCCTACATCTATCAGCTTTAAGGACAAGGAGGAGAGAGTGGCCAACGTCATCTCTGAACTCGGGCTGACCAGAGTGGCTGACTCTAGAGTTGGCACAGAACTAATCCGAGGCGTCTCTGGAGGAGAGCGGAAACGAACCAGCATTGGAATGGAGCTCATAACGGAGCCCCCCGTCTTATTCCTGGATGAGCCAACCACAGGCCTGGATGCCAGCACATCCAGTGCAGTGCTCATTCTGCTGAAGAGCCTGACTTTACTGGCTGCTGGGAAAATGATGTACCACGGACCTGCCAACGCTGCTCTGGCGTATTTCAGCTCAATTGGCTACCAGTGTGAAGCATACACTAATCCACCCGATTTCTTTCTGGATGTGATTAATGGGGATTCGACTGCAGTGGCAGCAAGCAGAGCAGGCCCTTCCAGAGATGACCAGGATGATGTACAAAGCAGAGAGGAAGGCAATTTGGAAACTGTGAATCCTCGGGATCCTGTAGTGGCTGATAAAACTGTGGTGGATACACTCAGTGTAAGATACGTGGGCTCAACCCAATATCAGTCTGTACAAGATGCACTGAGGAATATTGAAGACCGCAGAGGAACTAATAGAAATGGCAGGAGGATGGAGTCGATCACTTATGCCACCTCATTCTTTACCCAGCTTTACTGGGTTACCAAGCGCACCTTTAAGAACCTCATTCGGAACCCTCAGGCTTCAGTTGCGCAGATTTTAGTATGCATTATTTTGGGTCTAGTCGCTGGTGCAATATTCTTTGGAGCCAAACTAGACCCCACTGGAATGCAGAACAGAGTGGGCTCTTTATTCTTTGTGATCAACGAAGTGTGTTTCTACAGTGTGTCAACAATTGAGCTTTTCATTAAAGAGAAGAAATTGTTCATTCACCAGTACACCAGTGGGTACTACAGGCTATCGGCCTATTTCTTTTCAATAATACTAGGAGACCTGATTCCAATGGCAACTGTGCCTGCAATTACGTTCTCATTAATCACATACTGGATGATAGGCTACCAAAGACTCCCTGgcaatttcttcttcttcatgttCACACTGATTATGGTATCCTACACATCGACTGCAATGGCTCTTGCGGTCGGCACTGGAATGGAGTCTGTTGGCATGGCAAGCCTTCTGCTAACcatatactttattttcatgatgGCCTTCTCTGGCTTGCTGGTAAACCTGCCTTCTGTCCCAGCTTGGATCAACTGGCTCAAATACTTTAGTATACACAGATATGGACTGATGGATGTAAAGTGTTATGGTGAAGCTTATCTCTGTGGACAGGGGATTGGCTATGATAACTGGGCGATGTGGGAAAACATTGTTGCTTTGGGCTGTATGACCGTCATCTTCTTGAGCATTGCTGGTATAAAGCTCCACACAATTAAAAAGTTGCTGGATGTACTGGCTGCGAGGAAGGACCCTAGTGGTTTGTCTGGTGATGTCCTCATCGATGGAGCCCCACAGCCTGCCAACTTCAAGTGTATTTCAGGATATGTTGTGCAAGATGACGTTGTCATGGGCAACTTGACTGTCCGGGAAAACCTGCTGTTCTCGGCGGCGCTGCGGCTCCCTACATCTATCAGCTTTAAGGACAAGGAGGAGAGAGTGGCCAACGTCATCTCTGAACTCGGGCTGACCAGAGTGGCTGACTCTAGAGTTGGCACACACCTAATCCGAGGCGTCTCTGGAGGAGAGCGGAAACGAACCAGCATTGGAATGGAGCTCATAACGGAGCCCCCCGTCTTATTCCTGGATGAGCCAACCACAGGCTTGGATGCCAGCACATCCAGTGCAGTGCTCATTCTGCTGAAGAGGCTCTCAAGAAAGGGGAGAACAATTATATTGTCCATTCACCAGCCCCGTTACGTGTGTGAATCGTACAATAATCCACCTGATTTCTTTCTGGATGTGATTAATGGGGATTCAACAGCAGTGACCACAAGCAGAGCAGGCCCTTCCAGAGATGACCAGGACAATGAAAGCAGAGAGGAAGGCAACTTGGAAACTGTGGATCCTGTAGCGGCTGATAAAACTGTGGTGGATACACTCAGTGAGAAATACATGGACTCAACCAAATTTCAGTCTGTACAAGATGCATTGAAGAATATTGAAGACCGCAGAGGAACTAATAGAAATGGCAGGAGGATGGAGTCGATCACTTATGCCACCTCATTCTTTACCCAGCTTTACTGGGTTACCAAGCGTACCTTTAAGAACCTCATTCGGAACCCTCAGGCTTCAGTTGCGCAGGTTTTGGTAAACCTTATTTTGGGTCTGTTCACTGGTGTGATCTTCTTTGGAGCCAAACTAGACCCCACTGGAATTCAGAACAGGGTGGgtgctttatttttcatcacCACCAATCAGTGTTTCTCCAGTGTGTCAGCAATTGAGGTTTTCATCAAAGAGAAGAAATTGTTCatTCACCAGTACACCAGTGGGTACTACAGGCTATTGGCCTATTTCTTCTCAATACTACTAGGAGACCTGATTCCAATGGGGACTGTGCCTGGACTAGTTTTATCCTTAATCACATACTGGATGATGGTCGGCACTGGAATGGATAGTGTTGCTGTAGCAAACCTTATCCTTACCCTGTGCTTTATCTTAATGTATATCTTCTCTGGCTTGCTGGTGAACCTGACCTCTGTGCCGGCTTGGATCAACTGGCTCAAATACTTCAGCATACCAAGATATGGAATGACTGCACTCCAAATAAATGAGTTCAGAGGCTTGTATTTCTGTGGagacaaatcaaatcaaagtacAAGCTTTCAATCTGCAATGGCTAACTGTTTAAGCAACATAAACCCACTAGGAGGAGTGTGTTATGGTGAAGCTTATCTCTGTGGACAGGGGATTGGCTATGATAACTGGGCGATGTGGGAAAACATTGTTGCTTTGGCCTGTATGACCGTCATCTTCTTGAGCATTGCTGGTATAAAGCTCCACACAATGAAAAAGTACACATAACATTTTGTACCAGAATAAGATTTTTAATGCTGCATCAGGGATGTACCATACTCCCTGTCCTGTAAAGATTTCTTCCACTATCATTGTGACCCACCCCATGAAAGCAATTCTTGGCCTGTTCTTGCACAAAAATCTGAGTGTCTTATAATAGACTGAGAATTAAGGTTTTTGACCAGTTTTATCCCAGAATGATTTTAAATGGCAGGCCAAATACCAGACAAAAATTGTATGGTATAAGGATTACTTTGCTTGGTAAGGAGCAGATTGAGCAAATTCTATTAGTTTTGGTCCATAACCATGTCTATACATTAAGTTTTCATTATAGGATTCTGCATTTGCCATAGGAAGCAAAAATGTCAATTGTAAAAATCCATGTTTGTGGATTCTGTATATCATTACGTTTTTgtacaatttgaaattaaaccataaaacTAATGTAGAATTTTGGCAGGTCTACACTGCAATCTTTAACAA

Function

GO:

id name namespace
GO:0043190 ATP-binding cassette (ABC) transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178011 lncRNA downstream 387559 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA downstream 396652 14659419 ~ 14659991 (-) True G141520
TU177857 lncRNA downstream 610138 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 678330 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 682474 14373967 ~ 14374169 (-) True G141372
TU178079 lncRNA upstream 13197 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 23135 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 76655 15217474 ~ 15217807 (-) True G141583
TU178210 lncRNA upstream 848116 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 867244 16008063 ~ 16061038 (-) True G141704
AMCG00003227 mRNA downstream 25842 15010021 ~ 15030801 (-) True AMCG00003227
AMCG00003223 mRNA downstream 83044 14963319 ~ 14973599 (-) True AMCG00003223
AMCG00003222 mRNA downstream 141307 14888182 ~ 14915336 (-) True AMCG00003222
AMCG00003219 mRNA downstream 178627 14856090 ~ 14878016 (-) True AMCG00003219
AMCG00003220 mRNA downstream 207020 14832679 ~ 14849623 (-) True AMCG00003220
AMCG00003232 mRNA upstream 8450 15149269 ~ 15163406 (-) True AMCG00003232
AMCG00003240 mRNA upstream 77008 15217827 ~ 15227554 (-) True AMCG00003240
AMCG00003241 mRNA upstream 87716 15228535 ~ 15234790 (-) True AMCG00003241
AMCG00003239 mRNA upstream 112050 15252869 ~ 15259374 (-) True AMCG00003239
AMCG00003244 mRNA upstream 163981 15304800 ~ 15315470 (-) True AMCG00003244
TU178022 other downstream 382223 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 1626319 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1626319 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 2177222 12861426 ~ 12879421 (-) True G141004
TU177333 other downstream 2201302 12851021 ~ 12855341 (-) False AMCG00003144
TU178404 other upstream 1607242 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4402829 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4412052 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4414624 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 4424576 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile