RNA id: TU178070


Basic Information

Item Value
RNA id TU178070
length 927
RNA type TUCP
GC content 0.37
exon number 2
gene id AMCG00003231
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15056643 ~ 15140819 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATCTGCGCCACTGATGTGAAGGTGTTTGTCTGCCGCCGCAGTGCATGCCACAACTTGAGTCGGTtgagcatttacactgccaggatcaaaggctaccgatgcatttgatccgcaTCAGAAATGGCAGTTTAAATGCGCCtattgtttaactgttttagttGATTGAAGTAACCTACAGACAGTGGTTGACTGAAATAACTGACAGACAAAAGTGCATTAAGAACTAATAATTACAGTATCCCCCCAAAaaggagtaaatacaaactagtaattgctttatatacaaaatttacaaaattaaaactattaaaaataaagaacataaagaaaataacattttcccactacacaCTTCTGAATGGACAAGGCGATGTCAGAGATCAATGGCTTGTCTCGGGTCTTCAACTATCCTCATTTCTTACAGGCACTGCAAGTGAAGGAGCTGAGAGGCTTATATTTCTGTGGAGACTCATTAAATCAAAGTACAAGCTATCAATCTGCAATGGCTAACTGTTCAAGCCACACAGAACCCTATGGAGCAGtGTGTTATGGTGAAGCTTATCTCTGTGGACAGGGGATTGGCTATGATAACTGGGCGATGTGGGAAAACATTGTTGCTTTGGGCTGTATGACCGTCATCTTCTTGAGCATTGCTGGTATAAAGCTCCACACAATTAAAAAGTTCACATAACATTTGTTCTCAGCACTGGGTGGAGTTTACAAGCCTTACAATTTTCCACTAAAATGGCTCAGTTTTTATAACTTAATTATAAACCAAATTTAGACTATTATAACAATAtttgataacaaaataaaacttttatatagttatttatgatATTCCCTACTTATCTAAACTTGTGTGAATTTAAGATAATTTAAGGTGGTTTTCAACAGCCACGGGTCTaaagaattaaatcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178011 lncRNA downstream 412571 14630412 ~ 14669084 (-) True G141517
TU178020 lncRNA downstream 421664 14659419 ~ 14659991 (-) True G141520
TU177857 lncRNA downstream 635150 14443831 ~ 14446505 (-) True G141402
TU177827 lncRNA downstream 703342 14377649 ~ 14378313 (-) True G141374
TU177825 lncRNA downstream 707486 14373967 ~ 14374169 (-) True G141372
TU178079 lncRNA upstream 36499 15154016 ~ 15154370 (-) True G141569
TU178082 lncRNA upstream 46437 15163954 ~ 15172448 (-) True G141571
TU178100 lncRNA upstream 99957 15217474 ~ 15217807 (-) True G141583
TU178210 lncRNA upstream 871418 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 890546 16008063 ~ 16061038 (-) True G141704
AMCG00003227 mRNA downstream 50854 15010021 ~ 15030801 (-) True AMCG00003227
AMCG00003223 mRNA downstream 108056 14963319 ~ 14973599 (-) True AMCG00003223
AMCG00003222 mRNA downstream 166319 14888182 ~ 14915336 (-) True AMCG00003222
AMCG00003219 mRNA downstream 203639 14856090 ~ 14878016 (-) True AMCG00003219
AMCG00003220 mRNA downstream 232032 14832679 ~ 14849623 (-) True AMCG00003220
AMCG00003232 mRNA upstream 31752 15149269 ~ 15163406 (-) True AMCG00003232
AMCG00003240 mRNA upstream 100310 15217827 ~ 15227554 (-) True AMCG00003240
AMCG00003241 mRNA upstream 111018 15228535 ~ 15234790 (-) True AMCG00003241
AMCG00003239 mRNA upstream 135352 15252869 ~ 15259374 (-) True AMCG00003239
AMCG00003244 mRNA upstream 187283 15304800 ~ 15315470 (-) True AMCG00003244
TU178022 other downstream 407235 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 1651331 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1651331 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 2202234 12861426 ~ 12879421 (-) True G141004
TU177332 other downstream 2226314 12851021 ~ 12855341 (-) False AMCG00003144
TU178404 other upstream 1630544 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4426131 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4435354 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4437926 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 4447878 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile