RNA id: AMCG00003241


Basic Information

Item Value
RNA id AMCG00003241
length 984
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00003241
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15228535 ~ 15234790 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagagagagagagagagagagagaaagagagggagagagagagggggggaaaggcTGTTGACAGCTTGGCTCAGCTCTTAAGAATTTCCTCTCCTACTCCGGCTGTCCTCccctctcgctccctctccctctctcgctctctctcacacactccctTCCTCCTTCTCCATTAGTTTGCTTCTTAATTTCTAGGAGACGGGGATAAGCTCTCACACGCTCCAGAACCGGGCCAGACGTTCCCGCTCTCAGACATGGCCCACCCCTCCTCGCCCTCCCTTGGGCTCCTGATCCTCTTCATTGGCCAGGCTGTAGCAGGACCCGGGCCTGGCCCACTGCCCAGAGCCGATCGTGCCAGTGCCTGTCAGGAACACGGGGCCCTCCACCACAGACTGGACGCAGTGGAGCAGCGAGTTGTGGACACAGTAGGCAAGCTGGAGGCTGAAGTGTCCCTTCTCCTTGATACCATCGAGGCCCCTGAGTGGAGCCCCCTGCTGGACACTGCAGAACCAACCATTGACATTCTAGATGACAAAGGTGAGGAAATTGCAATTTGTGAAGCCCAGCAGAGCTCGAGAACCGAACCTACTAAACACTCTTCATTGACATTTAAGATTCTGAGATGTCTACAGTCCAAGATCATCACTAAAAGCGAAGCTGATGACATCACGGTGTGCAGCGACACTGATTGGATGAGAGACGCTGGTGCAGAATCAAGTTTTGAACTAGcattccagaaaaaaaatcaaacctcagatacacacagacagtctTCTACTTGCACATACAgctaataatataattacaactcaaatacaaatatgaacaaAGCAAGCATAATCCATTGTACCTGTAGTTTACTgaatagatttatatattttttacttttgatgTTTAGTAGATTTTGAGTTACTATACcattgtattaaaattataatacatatgtGAATATGAAGTTTAATAAAGATTTGCTTTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178100 lncRNA downstream 10728 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 56087 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 74165 15154016 ~ 15154370 (-) True G141569
TU178011 lncRNA downstream 559451 14630412 ~ 14669084 (-) True G141517
TU178210 lncRNA upstream 754145 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 773273 16008063 ~ 16061038 (-) True G141704
TU178296 lncRNA upstream 1260048 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA upstream 1260048 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA upstream 1260048 16494838 ~ 16498441 (-) False G141740
AMCG00003240 mRNA downstream 981 15217827 ~ 15227554 (-) True AMCG00003240
AMCG00003232 mRNA downstream 65129 15149269 ~ 15163406 (-) True AMCG00003232
AMCG00003231 mRNA downstream 87716 15056643 ~ 15140819 (-) True AMCG00003231
AMCG00003227 mRNA downstream 197734 15010021 ~ 15030801 (-) True AMCG00003227
AMCG00003223 mRNA downstream 254936 14963319 ~ 14973599 (-) True AMCG00003223
AMCG00003239 mRNA upstream 18079 15252869 ~ 15259374 (-) True AMCG00003239
AMCG00003244 mRNA upstream 70010 15304800 ~ 15315470 (-) True AMCG00003244
AMCG00003245 mRNA upstream 212196 15446986 ~ 15476398 (-) True AMCG00003245
AMCG00003246 mRNA upstream 330038 15564828 ~ 15573487 (-) True AMCG00003246
AMCG00003252 mRNA upstream 665567 15900357 ~ 15917547 (-) True AMCG00003252
TU178070 other downstream 111018 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 554115 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 1798211 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 1798211 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 2349114 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 1513271 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4308858 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4318081 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4320653 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 4330605 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile