RNA id: AMCG00003245


Basic Information

Item Value
RNA id AMCG00003245
length 4137
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00003245
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15446986 ~ 15476398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAGCCACTGGACTGGTTTTCAGATAAGACAGTGACATGGTGTGCTCAGAGGAATGTGCCAAAATGTGACGGCAAAGCCAGGGAGAGTGAAGAAATCTACAAGAGACAAGTGCTGTCAATCTCCTGCATTGCGATTGGAATCAGCCTGCTGGGCACGCTCTGTGTGGCCTTCTACTGCCGCAACAAGAGACGGACAGAGAAGCTACAAGCCCACCTGAAGGAGAGCCGCAGTCTCAAGAGCTATAGCGTCAACGCTGCGGGCCTCATGTCCAAATCGAGCCTGAGGCCTCAGTGTGGCCTGCAACTCCAGAATTACTGCAAAGGCCACGGATCATCGCCGGCTCTAGGGGGCAGAGTCCGTGAGTCCAGCTTCTCTCAAAGCCGCACCGCTCCTCCCTCCCACTCCAGAGCCCCGCCCACAGGGAAACATCACAGGAGCAATTCGCTGTCACACAGTCCCGACCAGAGAAGTAGACCGGCCTATCGGACGACCCCTCGCAGAACCCCGCCCCTTCCTAGAGGGAGACTGAATCCTATTGGAGGAGCCAGGGATTCCGGCCCCGCCTACCAGCACCTGCAGGAGGTGGAGTCTTCTGAGAGAGAGGCCGAGACCCTGAGAGGGCACCGCACAGCAAGGACAGGAAGTGATCCGTCGCAGGATACTTTCTTAAATATGCAAGCAGTTGTGGTGGGGGGCGGCAAGACTGAAGTGCCGTGCAGCCGCCTGGACGGGGCCGTTCCCGGGAGCTTCAGGTGCGGCCCCTCGAGCCAAGCCGTGGccgccacccctccccccctccgCGCCTGCTCCATTCCCATCATCCCTTCCGTCCTGGGACACGACGATACTTCTTGTATGCAAAAGGCCAGCCTGGGTGGCAGGGGAAGCTGCTGTTCCGTCCCCCTCCCCCGCTCCGGGAGGGCCGCGGTGCACGGCACACGAGGGGTGCACACCCCCCCATCACCAGGGGCAGCTGTAGCGGCGGGCGGCCAGCAGGAGGCGGTAGCGTTACTCCTGGAGGCGGCTCAGGAGCAGCTAAGGGTCCTGGCACACGCCCACAGGAAGCAGGAGGACAGCAGCCCTTCCCCCCCAGCCACGTGCGAGAGAGCCTACTTCCTGTCGCCTACCGGAGCAGGGGGAGTGACCCAAAACTGCCCCCCAGAGACCCAACTGGTCAATCCAAGAGAACCCCACAGAGACTCCACCCAGCTCTGCCAGTGAAGCGGGATTGGACAACTCACTTTGTTCGGACCAATCGGGAACAAAACACAACTGCAGGAAGGTGACAAAAAGCAGGCAGGAGAAAACTgttcaaaaaagacaaaaactatgaaacacacacacgtgcataAAGAAGCGAAGAATGAACAGTCAAAAGGGGGGTAGGGTTAACAActtatttaaaaagagaaattatttatatgcatttatttaaaatgagaagCTTCTACttagaaagaaaaccaaatagtCTGTCATCTTCatggtgtttttaattgtaaaaaaattaattaaatataaggTGACAAAAGTAAAGGAGGAATATGGGAATGATATAACTTTTcatttgtggaaaaaacaactcCTCCTCCACAGATTTTCAGATTCCCTTAGAAAGGTTTTCCATCCGTAAAGTCCTTTGATGAATCTTTTCACATTCCATGTACCCACTCCAAGATTGGCTTCAATACTAGTTTCCAATACTGTATCAGAGTGGCAGACTCTCgctaaacaaaaaagtaatttaaaccttaaaaaaacaaaatgatggcTTCTCCCCTGGAAGTTGTGCTTCTGTGGCAGCATCTTAAATTGCAATCACAGCTTcggaaaataatcaaaatagaGAAAGTGTCAGGATGTGCTTTGAGGTGCCAGCGCAGACGCACAGTAAGATCACATCCGCATCCCTCGGTGTCGCTGCCCCTCGAGTCTGTCAGTGCGTTGTTTTTGTACATCATTAAAAATGAGATTCTCCGGCTGTGCTGAGTCCTGTTGGGGATGAAAAAATGGGTATTCAGTGCCAGTCCTCCCTGGCCAGGCAGACAGGGAAGTGCCTGGCAATGAGGGAGATCTGGGGGAGATGCGAGGTGCTGTGAGGACCAGGTAGAGCTGGGATTCCTGAAAAGGAGGGTTTTGGGAAACGTGGAggagtttgtttctttatttttttattattttttttatgatgatttcttttttattgtatttggttCAAACTGAAGGTGTCACTTGGCTGCTATCTTTAAGAAGGGGAAGGAGGCGGCAGCGAGCAAAAAAATGTGACTGTACTGCACATACAGATTGGGAATTTTCCAAAATTGAAATACTCTTCGACAACTAATTCTCAGTCAGTAACACTCTAAAATAACGATCtagctctgtgtgtgagtgtgagtgtgagtgctTTCATTTGCCTAGGATATGGCCTTTTGaccatctgtttgttttatggcGTAACATTCCTGTATGAATCAGTCATTTCTGAGCCACGACTCCAGACTGCTGTCTCCTACTGGGGTTTGGAGAAGGGATCCTCAATGCACTGCATTGCGCTGAGCCTAGCAGGGCTGTCTGTCAGTGAAAGAAACCCATTCAACTGTATCAGCTTTTTGGGCGttattattcacttatttagttatcatttgatcatttatttaagttACTGATTCATGCAGTTTGGAAAAGAGGGAATGTTCTCCATAACTAGATGGGAAATATTCATAGCATCATCTCTGAAATTCGTCCTGAAACCTCAGTAGGGTTCTGTAGATTTCTGCTGTTTCAAAGATGTCACAGAAGGAAAAGTGgagctttttctctctccctctccccctctctctccccagcgAAGAAAACCTCACATCTCCGCTGCGTTTTTACATAACGCTTCAGAGAAACTATATTGGAAGTGTTCCATCGCTTCCAATCGTCTACACATGTGATATTAATGAGATTCTTCCTTCTGTAATTTCTTGTTACAATAAGTACAGTGTACTGAGATGCACCCGAAAATTAAAAAAGAGTCTACGGTCTCCGAGTGTGTTACAGAGATTTTATAGGATTTCCCTAAGCATGTTCTCTACAGTGAACTGCTTTTAATGAATCGCAGGCAGTGGCTTTGTGCTGGTGACCGATTGGATTTGGGAACCGGAACACATGCTTATTGCTTTCCTGGTGCTGATTAGAAACTCAAGAGCACTCTGCCTGGCTTGCAGCTAGTCTGAACCAGTCGGGGATTTTTAATGATAGTTCATAAAAATCAAGTTATCCATTCTTTTGCTCCGCTGTAAAACCCTACTGCATTATGGGAGCCCCTAATTGAGTGATTGTGTACCCCATGCACCGCTGTTACGATGGGAATAGCTGCAGTAAAGTTGTGAGcgctgtgtttttttgttgttgttgtgtttcttcaaaGACCAGCTGCTGTACgaattgaaaaagaaacaaaaaatgagaaACAACATCCCCCAGTTGTGCAGCCTCTGTAATTAACACAGCTGTCCACAACATAGTTTTGGTTGAAATGCAAGTTAGCAGGAGAGCAACAATGTGCGTTTCGGTTCTCagtgttgatttgtttgtttgtttgttccccCCTTCCTTGGTAAGCAAAAGAACCACCCcttgaaaaatgcaaataacgTTTCGCCAGTTTCTCAAAGATCTCTGTGACACAAACGCCCAGTTTCTCAGGTTCCTGTTCCCGACCAAACCTCTAATAGACCGATTTGCACATGTAGCCTTGAcagaggagggggtgggggtatcCATGTGTTTATGAAGCTATCGCTTGGCAGCAAACGAGACGGGccctttttctgtgtgtgtgtgggcgcgGCACGGTGGCCAGGCCAGTCCTACGGTGCGCTGCAAGGCCAGGCGGGGATCATCGGAGCTTAGCCTTGTGGCATGTCTGCATAAAATGACTTGTACCTGGAAGACACTGGCAAAATGTACTCCGGTGATGGATTCCAGCTGCCATCCACTGTAAGGCTACAGTATGCGTGCTCTTGTAAGGCCGATGCATGCTCTATCATTATCTATGTCGTTAAACCGTGCTAGTAGGGGCTTTTCCTCTTACCCGTACGAGGGTCTGCTGGGCACACAGTCTAAGGTGACTGCTCTCTG

Function

GO: NA

KEGG:

id description
K05457 NRG3; neuregulin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178100 lncRNA downstream 229179 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 274538 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 292616 15154016 ~ 15154370 (-) True G141569
TU178011 lncRNA downstream 777902 14630412 ~ 14669084 (-) True G141517
TU178210 lncRNA upstream 512537 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 531665 16008063 ~ 16061038 (-) True G141704
TU178296 lncRNA upstream 1018440 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA upstream 1018440 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA upstream 1018440 16494838 ~ 16498441 (-) False G141740
AMCG00003244 mRNA downstream 131516 15304800 ~ 15315470 (-) True AMCG00003244
AMCG00003239 mRNA downstream 187612 15252869 ~ 15259374 (-) True AMCG00003239
AMCG00003241 mRNA downstream 212196 15228535 ~ 15234790 (-) True AMCG00003241
AMCG00003240 mRNA downstream 219432 15217827 ~ 15227554 (-) True AMCG00003240
AMCG00003232 mRNA downstream 283580 15149269 ~ 15163406 (-) True AMCG00003232
AMCG00003246 mRNA upstream 88430 15564828 ~ 15573487 (-) True AMCG00003246
AMCG00003252 mRNA upstream 423959 15900357 ~ 15917547 (-) True AMCG00003252
AMCG00003251 mRNA upstream 735043 16211441 ~ 16220263 (-) True AMCG00003251
AMCG00003250 mRNA upstream 761014 16237412 ~ 16267392 (-) True AMCG00003250
AMCG00003254 mRNA upstream 855409 16331807 ~ 16341749 (-) True AMCG00003254
TU178070 other downstream 329469 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 772566 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 2016662 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 2016662 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 2567565 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 1271663 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 4067250 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 4076473 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 4079045 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 4088997 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile