RNA id: AMCG00003246


Basic Information

Item Value
RNA id AMCG00003246
length 423
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00003246
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15564828 ~ 15573487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAAAAGGAAGACGTTGTGCCTTGATGATGCAGCCCCCACGTACCCCCCTGAGCGATCGGAGCACTTCAAGCCATGCCGCGACAAGGATCTGGCCTACTGTCTGAACGAGGGCGAGTGTTTCGTCATCGAGACCCTGACAGGGTCCCACAAGCACTGCAGTCGCTATGACAACAGCCCCCTGGGGACTGGAGGTGTCAACAGCGATGATGTGGCCCCCGTCTGTCAGAATTCCGATAGGACCTGTCAACATTTTAACGAAgGGCTGAAGGTGGCCCAGGCTGTGGTCAATGTCAAATCCCACGAGACTTCTGGCCTACCCCCATGTTACAGACAAATGGTCCGCAATCTCATCAAGGTCCCCTCCATCAGTCCACACCCACTGATTGAAAGAGATCTCAAGGCCCGGTTTCCAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178100 lncRNA downstream 347021 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 392380 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 410458 15154016 ~ 15154370 (-) True G141569
TU178011 lncRNA downstream 895744 14630412 ~ 14669084 (-) True G141517
TU178210 lncRNA upstream 415448 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 434576 16008063 ~ 16061038 (-) True G141704
TU178296 lncRNA upstream 921351 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA upstream 921351 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA upstream 921351 16494838 ~ 16498441 (-) False G141740
AMCG00003245 mRNA downstream 88430 15446986 ~ 15476398 (-) True AMCG00003245
AMCG00003244 mRNA downstream 249358 15304800 ~ 15315470 (-) True AMCG00003244
AMCG00003239 mRNA downstream 305454 15252869 ~ 15259374 (-) True AMCG00003239
AMCG00003241 mRNA downstream 330038 15228535 ~ 15234790 (-) True AMCG00003241
AMCG00003240 mRNA downstream 337274 15217827 ~ 15227554 (-) True AMCG00003240
AMCG00003252 mRNA upstream 326870 15900357 ~ 15917547 (-) True AMCG00003252
AMCG00003251 mRNA upstream 637954 16211441 ~ 16220263 (-) True AMCG00003251
AMCG00003250 mRNA upstream 663925 16237412 ~ 16267392 (-) True AMCG00003250
AMCG00003254 mRNA upstream 758320 16331807 ~ 16341749 (-) True AMCG00003254
AMCG00003255 mRNA upstream 773937 16347424 ~ 16365986 (-) True AMCG00003255
TU178070 other downstream 447311 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 890408 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 2134504 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 2134504 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 2685407 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 1174574 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 3970161 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 3979384 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 3981956 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 3991908 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile