RNA id: AMCG00003247



Basic Information


Item Value
RNA id AMCG00003247
length 883
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00003247
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15887116 ~ 15891866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTGAACTTTGGGCAACTTCAGTCCATTCCCGGCAGGATATAAAGTTAAATCCCCACACGCAGTTTATTCAACcacaactgttttttaaatagaagTGCTTCACACAAGTGTTACAACTGCTAAAGGAAAGCATGGCTCTAAAGGAGATCACTGGGTTGTTGGTTTGCATCTTCTTATCAAAAGTTTTCACTTCACCTGCGGACTGCCCACCCACTTCCACAGATTATGAAAGCCTGTCTGCAACACTGAAGAATTtcaatgaatgttttaaatcGGACACATGGAAGAGGAAAGAGATTGATTCTTTCCTGGGCACCCTGAAAACAGCTACTGATCTACTACAAATAGAGCAAGAAAAAAGTTGTAAGAACTTCACTCCGGAAGAGTGCCCTGTCCCGCAGGTGCCCAGTGGGGGAGGCCTGCTGTGTCTCACCCTAAACAACACGCGCTTCTGCAAACCCATGTGCAATCAGGGCTATGACTTTTCATTCTTAAGAAGAAGCCGTCTGTACGAAGAATGTGGACATCTTAGCAAACAATGGACCACTCAGTATGTCGGAGGAAACACACTGGCAGTCTGTCAAAAGTCCGATACTCAAATCTCCGGAGCCAAAGGCAGCTATTTTCCAAAGGATCAAGACTGCCGGAAAATGACATTTGATAACGAGGCCCAGGAGAAGATGATAAAAAGCTTTATTGATGAACTAACTTTGAGCGGTATCAATGGGATGCATTTGGACAAATATGACTGCCTAATCTGTGGATAATTTAGGAGCCGCTGGCCAAAAACATAAGCCGAATGAATCCAGTCCATAGGGCATGTTCTGCTTTCTAACACATAAAGCCTGATAAAGCAAGGGCAAAATCAGAAGTGggctgaaa

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU178111 lncRNA upstream 632272 15252840 ~ 15254844 (+) True G141592
TU178099 lncRNA upstream 669565 15217242 ~ 15217551 (+) True G141582
TU178085 lncRNA upstream 696771 15189983 ~ 15190345 (+) True G141574
TU178084 lncRNA upstream 700791 15186071 ~ 15186325 (+) True G141573
TU177879 lncRNA upstream 1378277 14500971 ~ 14508839 (+) True G141412
TU178262 lncRNA downstream 599560 16491426 ~ 16500980 (+) False AMCG00003257
TU178408 lncRNA downstream 907093 16798959 ~ 16801312 (+) True G141829
TU178473 lncRNA downstream 1140559 17032425 ~ 17035242 (+) True G141885
TU178576 lncRNA downstream 1625854 17517720 ~ 17517921 (+) True G141955
TU178590 lncRNA downstream 1811306 17703172 ~ 17703460 (+) True G141965
AMCG00003243 mRNA upstream 585976 15288624 ~ 15301140 (+) True AMCG00003243
AMCG00003235 mRNA upstream 602574 15268221 ~ 15284542 (+) True AMCG00003235
AMCG00003237 mRNA upstream 619525 15266121 ~ 15267591 (+) True AMCG00003237
AMCG00003236 mRNA upstream 636712 15240501 ~ 15250404 (+) True AMCG00003236
AMCG00003233 mRNA upstream 670702 15204627 ~ 15216414 (+) True AMCG00003233
AMCG00003248 mRNA downstream 35902 15927768 ~ 15931031 (+) True AMCG00003248
AMCG00003249 mRNA downstream 79929 15971795 ~ 15992523 (+) True AMCG00003249
AMCG00003253 mRNA downstream 533020 16424886 ~ 16448261 (+) True AMCG00003253
AMCG00003257 mRNA downstream 572428 16464294 ~ 16500994 (+) True AMCG00003257
AMCG00003256 mRNA downstream 635323 16527189 ~ 16559195 (+) True AMCG00003256
TU177906 other upstream 1281679 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 1598374 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 1702473 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 2776482 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 3004118 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 662145 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 1784413 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 2774901 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 3643827 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 3727015 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile