RNA id: AMCG00003252


Basic Information

Item Value
RNA id AMCG00003252
length 1130
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00003252
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15900357 ~ 15917547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGAAGCTGGCCATGCAGGAGGATCCCAGTGAGGAGGCCAGGAGCTGCGCAGCTCAGGGTGGGGGCAGGGAGCACCTGAAGCAAAGTTACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACGCTTCATCCACAGAGCTGGACTGTGGCTGTGCGATCCCTCTGTGAACCGAGAAGGGCTCCCTGGTTGCTGTGGCTGCCTGATCTTGGGGGTGCGGTGCAGTCCTGTGCAGGTCCAAAAATGCCGGATGGACAGCAGGCCACAGAGAAAAGACGACTCCAACGGGAAGttaaaGCTGAAATTAACAAGTGGCGAGAACAAATTAAGGCTGCAACAGAAGATCTAGACTTGGCAAAAAATCACCTGGATGAAAAGGACAAGATCCTATCTGAGACTGTCCTCCAGTTTCAGCTATTGAAGAAACACGAAGATAGCGCTGAAAAGCAGAAAGCCGAACTTTTAAACCAGCAATGTAATCTCATAGAAACACTGgaGAAAATAAGGCAGAAGACCTctgaggagaaggagaagtTTTTTAAGGAGATCACAGAtttcaacaacaaatacaacctGCTGAGCAACAGAGAAGCCGTGGTTGAAAGCAGAGCCAAGTCCGAGATACTTAGGCTAGAACAGGAAGAACGCTCTTTAAACACGGAAATGGAGAGCATGGAACAGAGAAATATTCAATTGAATTCTCTGCAGGCAGAAAAGCGAGCGCTTCAATCACAGCTGGCGGGGCTTGAACACCAAATGAGAGAGCTTGAAAGAAAACTGAATGAAGCAAAAATGTTCACTGAATCTTTGCGAGCTGAAGAATTAAAAATCAGCCGGAGGCCACAGATAGACAGTGAATTTGTAAGGCTCAAAAAGGAGCTGGAGGGGTACAAGGATGGGGAACTAGAGAGTACCAGGGAAGCTCTTCACTCTGAAATCCATTTCCTGCAAATGACACTGATATGCTACATGTGGAGTCTGAAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178100 lncRNA downstream 682550 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 727909 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 745987 15154016 ~ 15154370 (-) True G141569
TU178011 lncRNA downstream 1231273 14630412 ~ 14669084 (-) True G141517
TU178210 lncRNA upstream 71388 15988935 ~ 15992678 (-) True G141681
TU178234 lncRNA upstream 90516 16008063 ~ 16061038 (-) True G141704
TU178296 lncRNA upstream 577291 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA upstream 577291 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA upstream 577291 16494838 ~ 16498441 (-) False G141740
AMCG00003246 mRNA downstream 326870 15564828 ~ 15573487 (-) True AMCG00003246
AMCG00003245 mRNA downstream 423959 15446986 ~ 15476398 (-) True AMCG00003245
AMCG00003244 mRNA downstream 584887 15304800 ~ 15315470 (-) True AMCG00003244
AMCG00003239 mRNA downstream 640983 15252869 ~ 15259374 (-) True AMCG00003239
AMCG00003241 mRNA downstream 665567 15228535 ~ 15234790 (-) True AMCG00003241
AMCG00003251 mRNA upstream 293894 16211441 ~ 16220263 (-) True AMCG00003251
AMCG00003250 mRNA upstream 319865 16237412 ~ 16267392 (-) True AMCG00003250
AMCG00003254 mRNA upstream 414260 16331807 ~ 16341749 (-) True AMCG00003254
AMCG00003255 mRNA upstream 429877 16347424 ~ 16365986 (-) True AMCG00003255
AMCG00003274 mRNA upstream 649224 16566771 ~ 16590833 (-) True AMCG00003274
TU178070 other downstream 782840 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 1225937 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 2470033 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 2470033 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 3020936 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 830514 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 3626101 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 3635324 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 3637896 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 3647848 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile