RNA id: AMCG00003254


Basic Information

Item Value
RNA id AMCG00003254
length 1857
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00003254
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16331807 ~ 16341749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCAATTAGGATTGGCAACCATGCACCATGATTTCAAGCCCAACAGGAGAGTTGATCCAGTCTCAATTTCTAAGAAACGATTGATTGTTTGAATAAATGTGCTTGCCTCTTTTAACTATTCAGTTTCCATTTCATGAGCATTTATTTATGAGCGTGTCGTCATCAAACCGCGTCGTGTCAACAGAAAGCATGGCTGGAAGTGTTGCAAGCGCCGCTGCTGCCCAGAAAGCTGCAAAATTGCACTCTCTGAATGGACTATTTGCAATTTATAAGAAACAAGGACCGACGTCGGCGGATGTATTAAATACACTGAAGGACAAGCTTTTAAAAGAGGCTGATCTGAAACAGAACTccaagaagaggaaaaaacaaatcctgaagATCGGACATGGGGGGACTCTGGACAGCTCAGCTTCGGGGGTGCTAGTGGTTGGTATTGGAAAGGGAACAAAGATGCTTGGTACTATGCTGGCAGGTTCAAAGaaATACACCACAGTCGGTGAATTGGGCAAAGCAACAGACACTCTGGATGCCACTGGGACCGTCACACAGGAAAAGGCATACGATCACATCACAAAGGAGGAATTTGAAGAGAAACTGAAGAAATTCACTGGAAACATAATGCAGGTTCCTCCACTATACTCTGCGCTGAAGAAAGATGGCCAGAGGTTGTCCGTTCTGCTAAAGAGAGGCCATGAAGTGGAGGCCAAGCCAGCCAGACCAGTGACCGTTTACAACCTCTCCCTGACGGACTTCAGCCCTCCTCTCTTCACGATCGatgTCGAATGTGGCGGCGGGTTTTACGTCAGGAGCTTGGTGGATGATATTGGCAAAGAGCTCTCCTCCTGCGCCCACGTAAAGGAGCTGGTGAGAACCAAGCAGGGCGCCTTCACACTGGACGAGCACGTCTTGCAGGAGGACAGCTGGACCATCGACCGAGTGGCAGAGTCCATCCAGGAGTGTGCCCACCTCCTCAGCCCAGAGCCCGCGTTCAAGAAACCCAGAACGGACCCGTGTCACACATCGGACGCTGGCAACGGAGAAGCAGGCGATGAGAAGGAGCAGTCGTAGCTCCCGAGCCCTGCCCGGCCCGCACAACCTCCGAGGAACAAACCCTGGAGGCGTCTCGGATGGGTTTGTGATGCAGGCAGCAACGAGGATTCATAAGATCAGGATTCTGAGCGCTTTGCTAAAGCATGTCTGCTCGAGGCTAGTCAATCCTTCAACAAGCTCTATGACTTTAGTAAAAGCTCaaatttgtatgttgtttttttaagcactgCATAGGAGTTATAAGGAAGCTGAAATAAGACATACCAGAGAGGCAACATTGTGCCAACCAGTTCAGGAAACCTGTAAAGCTGTGATGAAGTTTAACTATTCCCTTTAAGTTTGTTAAAAAACCTGTTTGGTTGTCCTTTATTCAGAGGGTGACTAAAGTGCAAGTTCAGGGAAACGCAAGAACCAGTGTAAGCATCAGTCACCCTTCATGAATCTTAACGGTGAAGTCTGACCTTATTTAAAACCCATAGATAAGAGGAACTAATCTCCCTCTTTAAACCTCCTCTTTCCTTTAAATGATTCAATCAGAATGTCGCACAAATTGTTTCTTTGTTACGTTTAATGTGGAAAACTGAGATTTGAAGCATTTTCCAGAATGTGTGTGTagacatttagattttttatttttttttgtgtaggtTTAGGCAATGAAAATAAGCTTTTTATGATCTGAAAATAGCGATTGTCAGCAGGGTTACTGTACAAGTACTTATTAAAATGTGCTAACTGCAGgctttttattgtgcttttgcaAACACTACCAGCACTGCACAACCCCCTATAATTGACTTGGA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K03177 truB, PUS4, TRUB1; tRNA pseudouridine55 synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178234 lncRNA downstream 270769 16008063 ~ 16061038 (-) True G141704
TU178210 lncRNA downstream 339129 15988935 ~ 15992678 (-) True G141681
TU178100 lncRNA downstream 1114000 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 1159359 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 1177437 15154016 ~ 15154370 (-) True G141569
TU178296 lncRNA upstream 153089 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA upstream 153089 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA upstream 153089 16494838 ~ 16498441 (-) False G141740
TU178367 lncRNA upstream 311942 16653691 ~ 16656167 (-) True G141795
TU178459 lncRNA upstream 573189 16914938 ~ 16919500 (-) True G141871
AMCG00003250 mRNA downstream 64415 16237412 ~ 16267392 (-) True AMCG00003250
AMCG00003251 mRNA downstream 111544 16211441 ~ 16220263 (-) True AMCG00003251
AMCG00003252 mRNA downstream 414260 15900357 ~ 15917547 (-) True AMCG00003252
AMCG00003246 mRNA downstream 758320 15564828 ~ 15573487 (-) True AMCG00003246
AMCG00003245 mRNA downstream 855409 15446986 ~ 15476398 (-) True AMCG00003245
AMCG00003255 mRNA upstream 5675 16347424 ~ 16365986 (-) True AMCG00003255
AMCG00003274 mRNA upstream 225022 16566771 ~ 16590833 (-) True AMCG00003274
AMCG00003277 mRNA upstream 273571 16615320 ~ 16620560 (-) True AMCG00003277
AMCG00003276 mRNA upstream 322991 16664740 ~ 16665930 (-) True AMCG00003276
AMCG00003266 mRNA upstream 339304 16681053 ~ 16710859 (-) True AMCG00003266
TU178070 other downstream 1214290 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 1657387 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 2901483 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 2901483 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 3452386 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 406312 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 3201899 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 3211122 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 3213694 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 3223646 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile