RNA id: AMCG00003255


Basic Information

Item Value
RNA id AMCG00003255
length 6611
RNA type mRNA
GC content 0.43
exon number 19
gene id AMCG00003255
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16347424 ~ 16365986 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAGGGGGCGACAGAGCGGGCCTCCTTCGCGCTCCCCCTAGCGGCAGGACGGTGCGCTGCGCCGCCGGAGTGCCACGGTGGTCGCTTTATGAAACCTCCAATCTGGATCGCGGCGGGCACCACAGGAAGAAGATAGAGGAGTTCTCTAGGTCTTCTCGGGAGAAGCTGCTCCAGTCCAAGCACAAGATGTTCTCCAAATTCACCTCCATCCTCCAGCACGCAGTGGAGGCGCTTGCTCCTTCACTACCTTTGCAGGAGGACTTTGTGTACCACTGGAAAGCTATAACGCATTATTATATTGAGACATCAGATGATAAAGCTCCAGTGACAGACACAAACATTCCTTCGCACCTGGAGCAGATGCTTGACATCCTGATTCAGGAGGAGAATGAGCGGGAATCGGGAGAGACTGGGCCCTGTATGGAGTATCTCCTCCACCACAAGATCCTGGAGACGCTGTACACACTGGGCAAAGCTGACTGCCCTCCAGGAATGAAACAGCAGGTCCTGGGTTTTTATACCAAACTATTGGGACGGATTCGCCAGCCGCTCCTCCCACATATCAACGTACACAGACCGGTGCAGAAACTAATCCGACTTTGTGGCGAAGTCCTCGCAGCTCCTACAGAAAACGAGGAGATACAGTTTCTGTGCATTGTGTGCTCCAAGCTGAAGCAAGACCCGTATCTCGTCAGCTTCTTCCTAGAGAACAAGGTCAAAGTCTCAGCTGCCCGAGGGCTTGCTGCAGAAGGCTTGCTGGGGAATGCTGAAGATATGAAAAGCGCCTCCAGTCCAGACACTGGCCAGGCCCAGGCATCTGTGGGTCCAGGTCTGGAGAGCGCCTCCGAGGGCCAGTCTTCACAGCAGGCCGACAGGGCTGCTTTCTCGTTGAATCGGCTAGCCATCCCTTCCCAGGCTGAGGCGTCTGCCAACCACCCCAGCCACAACTACAACCTCGTCAACTCCTTGCTCAATCTCACAAAGAGCCCTGACGGGCGGATAGTGGTGAAGGCCTGTGAAGGTCTGATGTTGTTAGTAAGCCTGCCCGAGCCAGCAGCCGCCAAATGTCTGACGGAGAACACAGCCCTGTGCGACCTGCTGACCGAGAGGTTGACCGTCTTCTACAGAGCCCTGCCACAGTCCATGGATCCCCTGGACATTGAGACCGTGGAGTCAGTCAACTGGGGCCTGGATGCTTACAACCTTAAAGAAGATGCAACGGCGTTCCCTGGGAAGCGAGCACTAATCTCCTTCCTGTCCTGGCTGGATTACTGCGATCAGCTTATCAAAGAAGCACAAAAGACCGCAGCTCTGCAACTGGCGAGATCAGTGCGGGAGAGGTTTTTTGTCTCTGTTATGGAGCCTCAGTTAATGCAGACGTCAGAAATAGGAATATTGACCTCGACCGCTCTCCTAAACCGCATCATCCGTCAGAAGAGAGAGCCAGAGACCCTGGCGGACATCAACAGACACCCTCTACGCCATCGGCTCATTGAGCACTGCGATCACCTGTCTGACGAGATCAGTATTATGACCCTGCGCATGTTCGAACACCTCTTGCAAAAACCCAATGAGCACATAATTTACAACCTGGTGCTGCGCAACATTGAGGAGAGGAACTACGCTGAGTATAAACCCCCCTGTGCCGAGGACAAGGACGTGGTGGAGAACGGACAGATACCGGGAGCAGTGGACCTAGAGGAAGACCCGTTGTTCACTGACATGTCACCTGACAACCGACTGTCGAGTCCTGATTGGCTGAGTGTCTCGCCCCCTCAGACTCCAGACCACGTGAAGTCTGATGGGAAGACGGAGGTGCACAAGATAGTGAACAGTTTCCTTTGTTTAGTCCCGGATGAGGCCAAATCCTCGTACCACGTGGAAGGCACAGGCTATGACACCTACCTcagagatgcacacagacagTTTCGTGATTACTGCGCTATCTGCATGAGATGGGACTGGCCAGGGGTCCCCAGGCCTTTTGAGAAATGCAATTTGGATGCCAGCTTCTTTGAAGGACATTTCCTCAAGGTTCTGTTTGATAGAATGGGGAGAATCCTCGATCAGCCCTACGATGTCAATTTACAAGTGACGTCAGTGTTGTCAAAACTGTCCTTGTTTCCCCACCCACACATACATGAGTACCTTTTAGATCCCTACATCAACCTGGCCCCAGGCTGCAGATCTCTCTTCTCTGTCATTGTCAGGGTGGTTGGTGACCTGATGTTGAGGATCCAGCGCATTCCGGATTTCACGCCCAAACTTCTGCTGGTCAGAAAACGATTGCTGGGGATGGAGCCGGAAGGGCCTGGCATTGACCACATGACCTTGTTGGAGGGCGTGATCGTCCTGGAGGAGTTCTGTAAGGAGTTGGCCGCCATAGCATTCGTGAAGTTCCATGCCTCCACTACACCATAACCCAGACCACCGCGCTGTCCTGCTGTGAGCCTCGCAGACTCCCAGCCAGACACTGGGAAGACTTTGGCCGCAGCAGTGGAAGAATCCATCCTCTGTTGAGACCGGGGGGGCGCGACGGGCCGCCATTAACTTTGGCATCAGCGCAAGGTCACCTTATTGAAACACTGCAGATCTCTGGAGGGCTCAGCGGATGCGTCTATCATCCGATCTTCTGGGTCAAAGGTCGCGTCCATCAAACTCTTGTATCTGGTACAGCGGGAAGTCACACGCAGCCAATAGGATGAAGAAGGGAGTTGGTTTTAAAACTAAttcaagaagagaaaaaaactaaattggggtttacaattttaattttctttattttcaggtgttttatttttacccaaGTTTTAAGATGGTCAAAACTAATCAAGTTGaattcagtttttacatttttttctgctacACAATTCGTGGGTCTCTATTTATGATTGAACAGGACGGATTAACAGAAATCTAAGGCCTGTAAGCATTTATGCCTTAGTACACATTGCCTTTCTGTTCTGAAGCCTGGAGACCATTTTTCGGTAGAGTTTTACTTTAATCAGCAGTTTTATGTGTCAGATGTTTAGGACGACGTTTCGGAACTGGCCAGAATACAAAAGTAAAGAGTTACAACCTATTTTAGCATCTCAAAATTACAGCAGCCTATCAAGGTAACACTGCAGCCTAAAAAACGTAACACAGAATAATTACAGGAAAGGTTTGGAAATGATGATTGATTTTGTAGGGGTCCGCAAGCCTGTTTTAATTTGACATCCTTTTAATTCAACAACTGCAGTGCCTTGTAGAACttcaatctgtttttcttttgaagatccaaatattattttgtgtcgTTAAGGAATATACATGGGGTGCAGTAATTATAACATTGAACATTAAAGATGCAGCTTTTAATATACTTCCCAGAATCCTTAGCTTCATGCTCATTTCTCCATCCAATTGCACTTTTTTATGCTTGTGATCCCTAGTCTGTGAtagaaaagtggaaaaatacGATGAATATAAAAACCTGAGTTATTGTCCCAGTCTCTGTCTTTCCGTTGGTCTTtgaaacagtgttttaaaaaaacggTCTTTGTGATTTAGTTTGATTTGTATGCTTAAATAAACCATTGTGTTGGCTGTGCCTTAGAAGTGGGCATGATataagtattatattttaagtgttttactCTGTTTTaagtaagaatgttttatttatagcaGTTGAACAGGCACTGCtttgtgaacaaaataatgtgggACATACATGTAAAGCCATCCACactatcattttgttttgttttttatttttgaagtggtGACATTTTTCCTTAAGCTGTTCAGTTGTATGGATTTTGACAGcgttttagtgttttgtttaaaaggaatatttttaaaaactgccGATACAAGTTACATGCTATGACGAACGAGCTGACTGCGATTACTTGAACGTTGAAAGGAGCGGGGTTCTGATGCCTACAGAACACAGGGagttttaaaagtttgtgttcTAGTATTATTTCTAACCGATTAGTCAATTTATGCAAGTCTAAATGCAAGTCTCTCCTGTCTCGCACGACGAACgtgaataaatacacattccATTTGGTGTGAATAGACACGATGTCAGTCCAGTATTGGAAATGCTCTTAAACCTGCTATCTGGAGCATGTGGATTATTTTGTGGTGTACAGTAACTGAGGGTTTGTTTTATCCTGTATTAGAGTGCAAACGAAAGGTTTGTCCCATTACGATATCTGAGCATTTTATGCAAGTGTATGAAAAAGAATTGCACATAGATTCCAGTgtcttatttaatttctgtaaccTGTTTCTTACTCCCAACATGTAATGggtttctgtctgtctatacAGTGCATACTTTTCATGAACCAAATGTTTTAACAAAGGGTTGTAACTTACCAGAGTGACATCATTGCTTAAGCcagaaaataactttttttattcatgcaCATTTTTATACCAACAGAGTACACTGTATAGCTTTGGAacattgtgtatatatgtaaaataaccTTACTAGCAAGCGCCCATGAGGAGAtcttataaaatattgtaaatgcatgCGTACACATGGTTCACAAGACCCTAATTTATTTGAGAATTTCATGGCAAAAACTGTGTCAGCACCTTTCCACCAAAATTAGCTAATCATCCTTTATTGTCGAGTTGAAACTTCTGTCATGATGCCTTACTTACTTAGCGCAGTCCCTTGGTGTTGTGATCATTTGATTTCTCAATTGTGATATAAACAGGGAAATGAGATTCCCAAATcagattttaaagcatttttcccctcccccacttaattgtatttgtgaatAAGTAtcccaaaaaaacacttttgactGTAGCAGCAGCTGTGAAAGTACATAGATCTTTTTAACGACAGGTGATGCATCACTGCTGCAATGCCAGCGAGTCGAACGACAGATGGCTACAGGTTCGGCCATTTTTATGTGTtgacagcattttaattttttcatcttACAATATAGATGTCGACCAATCACTGTCGATGAGTTTGAGACTCTTCTGTCCATGCCTTATATCATAAACACTTGGTCTGATTAACGACGCAGTACTTTTATGTCGTCGTTGAGGGACcataatgctttttttgttttgttttcccatacCCTATATGTTCCGTTAACATGTCCCTTTTCATAGGTCATGTCATTTTTACCATTGCAAAGAGTTCACCCCTTCTTTCGGCTAATAAATGATGGAAGGCTCATTGCTTGTGCTTCTGTCTTCCTCGTCCACACAGTAACACGTTGCACCTTTTCATTGTACTGCCTAAGCCAGGACATGTTGTACCTGTTTAGCTAGTGTGACTACCTTTGtaatcatgttatttattgttgctTGCTTCCCACTATTGCTGTTGTAAATGATCACTCTATTAATCATCCTCAGATACATTAAAAGACTGCATTCTAGAAGCCTCTTCTTTTTTCATGCTCCTTCCTGTGTCAATGAAGGTGAATCTGCTTGTTTGTAAATGGCAAGGCTGATGATTTGACCTTGATGTGGTGAAAGAAACCCAATCACGAGCAAGGAACATTGTGCATTGTGTCTAAGGTTTGCACATCACTAAGACCTTCCACAACCTTGAAATGGATCAAGGGAAAACCTCTATTTGTCGATTTTCCATTGCAATCCTGCCATCATGACCCTGGTTGTATCTTTCGGTTTGGGTGGATGGATCGGAGGGGCATTGTAATCGATTTTCCCAgtgcacaaatgcaaaaatgggTACGAAATgttaaggaaaacattttactttaatgaTTTGGTGTTAAGTTACACCTTTGATTATCAATACAGATTTGAAGATTGCAATAATGCTTCTAAAATGGTTGATCTTCTAAAATGGTCTCTCAGATCCTaatttgattattaataataataattataacctAAAGGCTGTGTtggatttatattttgaatttgaaaagtgAACTAGAAACCATATTGGGTGTTTGGATATTTCTCCTAAAAGAAATGGAGTTTGTCTACAAAGACAATTCCTTCACCGTGTTCCTGCAAGGTTTTTAAATGGAGAGTTTTATAGCTGGGATTTCTTAGCAGTTCAgctttgtaaaattaatataatcaaaCTGCCACATGCTTTGTGCAAATGGGAATCAGTGATATATCGTCTCCTAGGCTTTAGTTGGCAGTACGAAAAATATTGCCTTATTGCCTTGTATTATTGCTCTGAAAATGTTTGTgctttagttttgtatttggtCTGTATTACATCTTACCAACACTGCCAATAGTCCTGGAAGGGAATTTATAAACAGTACACTACAGACATCAGTACTAAGGCTGTATTATACACACTTGCTAACTCACATCCATTGTCGAATGATGGTGTACGTACATCATGTTTGTCTATATTGTGCAGATAGATTCATTTCAGGTAGGGGATTAATGAAGCATCTCTTCTGTCTGTAACTGCCATCTAGGTTCTTTACCTGTCCTATTTTGGTACTCTACTTTTGAAGCATTCttaatatgattaaataagTGAAAACTGTGAGGTCTTAAGATTGAATTACTTGTACTGCTGTACTACATGtattggaaatgttttaaaatccaaTAAAAGGTTTTCAGACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178234 lncRNA downstream 286386 16008063 ~ 16061038 (-) True G141704
TU178210 lncRNA downstream 354746 15988935 ~ 15992678 (-) True G141681
TU178100 lncRNA downstream 1129617 15217474 ~ 15217807 (-) True G141583
TU178082 lncRNA downstream 1174976 15163954 ~ 15172448 (-) True G141571
TU178079 lncRNA downstream 1193054 15154016 ~ 15154370 (-) True G141569
TU178296 lncRNA upstream 128852 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA upstream 128852 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA upstream 128852 16494838 ~ 16498441 (-) False G141740
TU178367 lncRNA upstream 287705 16653691 ~ 16656167 (-) True G141795
TU178459 lncRNA upstream 548952 16914938 ~ 16919500 (-) True G141871
AMCG00003254 mRNA downstream 5675 16331807 ~ 16341749 (-) True AMCG00003254
AMCG00003250 mRNA downstream 80032 16237412 ~ 16267392 (-) True AMCG00003250
AMCG00003251 mRNA downstream 127161 16211441 ~ 16220263 (-) True AMCG00003251
AMCG00003252 mRNA downstream 429877 15900357 ~ 15917547 (-) True AMCG00003252
AMCG00003246 mRNA downstream 773937 15564828 ~ 15573487 (-) True AMCG00003246
AMCG00003274 mRNA upstream 200785 16566771 ~ 16590833 (-) True AMCG00003274
AMCG00003277 mRNA upstream 249334 16615320 ~ 16620560 (-) True AMCG00003277
AMCG00003276 mRNA upstream 298754 16664740 ~ 16665930 (-) True AMCG00003276
AMCG00003266 mRNA upstream 315067 16681053 ~ 16710859 (-) True AMCG00003266
AMCG00003270 mRNA upstream 362928 16728914 ~ 16737927 (-) True AMCG00003270
TU178070 other downstream 1229907 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 1673004 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 2917100 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 2917100 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 3468003 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 382075 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 3177662 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 3186885 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 3189457 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 3199409 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile