RNA id: AMCG00003256


Basic Information

Item Value
RNA id AMCG00003256
length 4061
RNA type mRNA
GC content 0.48
exon number 19
gene id AMCG00003256
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16527189 ~ 16559206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGTCAACGGCTGATTCAATTAAAACCAGAACACCCTGTGGCTCGCCTGTTTTgcttattgtattgcttttcttttctcgtCTTTTAGTGTTGGATCAGCTGCTCTCAGAACTCGACGAATTCCTGAGGATTCTTGACAAGGAAAATCTCAGCAGCAACGCCATCGTCCAGAAATGCCTTCTCACAGAGCTCCTGCAGGGTTATATGTCATCAAATGATGGTGATGAGGAGTACATCTACATGAACAAGGTGGTCATGTGTGGACAGAATCAAGAAAAACACGTTTTTGAGCGAGATGACTTGAGTGATATTCTGACCAATGGAAATCTAGGGAAATACATGCCGGCTCCCCAGAAGAGCCTGCCAGACCTCCCGCATCCTAAACCATGTCCAGAAAGAGATCTAATCCCACTCCCCAAACCCGACTCTCCCGAGGGTTACTACGAAGAAGCTCAGCCTTATGACATGGCGCCCAATGAGGACTACGAGGCCGTTAGCAGCTCCTATGAGTCCTACGATGAAGAGGAGGTGACTAAAGGCAAGTCGACGACCCACCAGTGGCCTTCCACTGAGGCCTCCATTGAGCTGATGAAGGATGCCCGTATCTGTGCGTTCCTGTGGAGAAAGAAGTGGCTGGGCCAGTGGGCCAAGCAGCTGTGCGTCATCAAAGAGCACCGCCTGCTGTGTTACAAGAGCTCCAAAGACCAGAACCCGCAGTTAGATGTGAGTCTGGTGGGCTGCAGCGTCATTTACAAAGAGAAGCAAGTGAAGAAGAAAGAGCACAACCTGAAGATCGTTCCAATGAGCGGAGAGGTGATCGTTCTGGGCCTTCAGAGCAAGGAGCAGACAGAGCAGTGGCTTAAGGTAATTCAAGAAATCAGTGCTAGACAAGCTGACGTTTCTGATGTTTCCCACTATACTTCAGACTCACCGCGGCTCATCTGCACGAAGGGTGACACCAATGAGAGGTACTCCATCACGTCGGAGAGCGGGAGCAGCACAGACAGTCACGTAGAAACTCCAGAAATGAAAGACGTCAAGAAAAAATCTGGAGCAGGTCTGAAGCTGAGTCATCTAATGAACATTGGAAAAAAGAAACCTACCTTATTGGACAGTCCAGAGAAAACTGTCGACACCTCTGGGTACCTCAACGTGCTCGTAAACAGCCAGTGGCGTTCTCGCTGGTGTTCGATTAAAAATGGGCAGCTGTGGTTCTACCAGGACAAGGGCAGGAACAAGGTCACCCATCAACCAGTAACCCTGGAAGGCTGCATGGTGCTTCCAGACCCCAGTCCGGACCACCTGTACTCCTTCAGGATCCAGCAGGACGGAGAACAGCTAGCCACGCTGGAGGCCAAGTCCTCAGCAGAGATGGGGCACTGGCTGGGCCTGTTGTTGTCGCAATCTGGCTCCAAGACCGACCCAGAGGAGCTGACGTACGATTACGTGGACTCTGACAGGATATCCTGCATAGTCAATGCGGCAAAGACCTCTTTATACCTTATGCAGAGGAGGATCTCTGAGCccaatacatacacagacaaccTGCCTGCCATTCAGAATGACCCGGATGACATTTACGATGATGTGGCCGCGACGGAGCAGGAGGAGGCCGTCGGTATCCGACTGAGTGCCGAACAGGATCCAGACAGAGTCTACCTAGACCTCATCCCTGTGAAATCCTTCCTCCACACCTCTGGCAGGACTTCCCCCCTGGGATCGTCAGGGCTGGGCCAGGACCCTAGCCACACACTGGCAGGCACCATAGGGCCCAGGGACTCAGAAGAAGTTGACAGCAAAGCAGAGGAAACCACAAGCAAGCCACCCCAGGTTAACCCTGAACCACCGCAGACATGCAACAACACTCACGTCCAGCCTGTGGCGCCAAAGATGGAGGCCGAACAGCCGTTCCCCATAGCCACCATCAAAATCCAGTCCCAGAATCAGAAAATCACCTTTCCCAATAACGAACCCCAGCGGAGATCTGTGCCCAACCCCCAGGCGGTGAAATTGCCTACAGAGACTCCTGAGAAGCTGAGAGTGGCCGCAGTAGTCTCGGTGGGATCGATAGAGAATAAACTTGGGAAGAACCGCACAGAGGCAGAAGCCCGCCGCTTCACAGACGAGAGGGACCggctggagagggagaaggagcaGATTCGCAGCAACCTGGCCCATCTCCGCAAACAGAAGCGAGAGCTGAAAGACCTCCTGTCCTCCTCTAAAGACCGGGCGGAGCAGGCAGCGCTGGAGAACCGCCTGCGGGAGATGGATGAGGAGTGTCGGCAGGAGGAGAGGCGGCGAGTGGATCTGGAGCTCAATCTGGTGGAAGTTAAAGAGAACCTGAAAAAGGCCGAGTCGGGGCCCTTCACCCTGGGCACGACAGTGGACAGCGTCCTACTCGATACAGTCAGCTCCAGCGCAAAGCCCACTGTATGCACAGCAGCACCCGCAACACCCAGCAATGGGGACACATCGCCAGTCAACTCTGCCACAGCCTTAAAGAACAGACCGATATCCATAATGGTGGCCagcaaaggaaatgttttacagaaagcCAAGGAATGGGAAAAGAAAGCCACCAGCTAGAATTGACAGTCCTCCAGCAGTAAACTGCTTCCATGGACTGGAATGGTCACCTTGTAATCAGGTCTGCTTGAGACTTCAGCCAAGGATGCCAGGGCTGACTGGGCCTCCGGGCTGAGCTTGCATCTCAACAGACATTGCTGGGATCTGGTTTCGGCTTCGTAAAATCAAAAGACTGGATCCGCTGTTATGCCACTGAGCAATGGAAAGTGCTCATCAGTCTTTTACACAATCTCCATTTTAGTCGAATATGCTTGTTCCCTTGGACAAGCACGTTGCTGTACATATGTTTACTGCAAATGcttggttttacaaaaaaaaaagcaaaaagggaaatatagAGGTATAGTTTAGCATTAAGAACCTTTTAATACATTCAGCGCACATCACAGATTACTGACTGGCAGGATTTCAGTCATATCCGGGGTTAAAACAGAGACCCCAAATCATTCTGTTCAAGGGTCTGTATGTAAGATGATTTAACAATTGCTTACATCTGATTGTACAGTGCaagcatatttttgtatttttgataaaGACAGGTCAAAGCATCCtatctgtattttctttaccAATCATGGGTGGAAAGAGGTGTAAACCTAATtagtaattttttattttttttaatttgagctCCAAAGACTGTGGGAATAAAAGCATCTTGTCCTAAAAATCTACATACCTTCCTAACACACGTCTCCTCTCAACACAAGGCCCAGGTCATCAGTCCTGATGTATACAATGTAGGTAAAACCACTGGAATcaggcttttgaaaatgtgatcAAATgtctaaagaaaaataataggacaGGCAGGATTCTAAACCAAGGAGCAAAAACTATAAGAGTAGCAGCTTCATGTTTATGCAgatcatttaatttgtcttttatgTTCCTTTCCCAGAAGATCTGTAACTATTTAGGTTCACcattactatattattaataataaaataatatattgcaccAGCTGTTTCAGGGTGAGAGGGTTATCTTTTCCAGAACTACGTGGAGGAGAGAGGCCTTTAAAAAAGCCAAAGACAGGTGAAGTTTGAATGAAGAATACGGTAGGAGATATTGACATTTTTTGAGTCACAGAATAAGTAGAATAGGGTACATATTCTGGGATTCACCGAATGTGAATATCTCCCATTGTCAATCACGCAAGATGACATTATTTCAGAACCTGGGGACTTACTAACAAGGTGCCACTCGCCTCTACGCTGCCTTAATGAAGAGCAATCTCCATCAAGTCAATTTTccattgttgtttgtttgctatgTTTTTCCTCCCTAAAAAGGTCAGCTTTTGCTagtacaaacaaacattgtagacattgtatatttttatgtatgtccGTAGCAAGgttgtaaatacatatataagccTATCTATAGTGTAAACAGTTTCTTTGATTTGCTAATGTATGCCAGTTACAGTGGTGGTTTATGCAAATAAAACGATTATCAAA

Function

GO: NA

KEGG:

id description
K23782 AFAP1L; actin filament associated protein 1-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178262 lncRNA upstream 26209 16491426 ~ 16500980 (+) False AMCG00003257
TU178111 lncRNA upstream 1272345 15252840 ~ 15254844 (+) True G141592
TU178099 lncRNA upstream 1309638 15217242 ~ 15217551 (+) True G141582
TU178085 lncRNA upstream 1336844 15189983 ~ 15190345 (+) True G141574
TU178084 lncRNA upstream 1340864 15186071 ~ 15186325 (+) True G141573
TU178408 lncRNA downstream 239764 16798959 ~ 16801312 (+) True G141829
TU178473 lncRNA downstream 473230 17032425 ~ 17035242 (+) True G141885
TU178576 lncRNA downstream 958525 17517720 ~ 17517921 (+) True G141955
TU178590 lncRNA downstream 1143977 17703172 ~ 17703460 (+) True G141965
TU178591 lncRNA downstream 1153465 17712660 ~ 17712864 (+) True G141966
AMCG00003257 mRNA upstream 26195 16464294 ~ 16500994 (+) True AMCG00003257
AMCG00003253 mRNA upstream 78928 16424886 ~ 16448261 (+) True AMCG00003253
AMCG00003249 mRNA upstream 534666 15971795 ~ 15992523 (+) True AMCG00003249
AMCG00003248 mRNA upstream 596158 15927768 ~ 15931031 (+) True AMCG00003248
AMCG00003247 mRNA upstream 635323 15887116 ~ 15891866 (+) True AMCG00003247
AMCG00003260 mRNA downstream 31572 16590767 ~ 16610586 (+) True AMCG00003260
AMCG00003258 mRNA downstream 66255 16625450 ~ 16653567 (+) True AMCG00003258
AMCG00003259 mRNA downstream 106239 16665434 ~ 16671432 (+) True AMCG00003259
AMCG00003261 mRNA downstream 152077 16711272 ~ 16722062 (+) True AMCG00003261
AMCG00003262 mRNA downstream 186029 16745224 ~ 16748526 (+) True AMCG00003262
TU177906 other upstream 1921752 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 2238447 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 2342546 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 3416555 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 3644191 12878685 ~ 12882998 (+) True AMCG00003141
TU178585 other downstream 1117084 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 2107572 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 2976498 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 3059686 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile