RNA id: AMCG00003268


Basic Information

Item Value
RNA id AMCG00003268
length 1614
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00003268
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16908004 ~ 16913379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGCAGAAGCACGATGGCAGAAGCTGACTCCCAAAGACCGGTCCAAAACAAGGAGCTGAAATGCCCCATTTGCTTGGATTTTTACATAGACCCGGTCCAACTGCCCTGCGGACATAACTTCTGCTTGACCTGCATCAGGGCTGTGTGGGACTGCGATATCTCAGAGGCGGGGCCATTCTTCTGCCCTGAATGCCAGATTTTCTTGGAGGCAAACCTTTCCCTGGAGGTCAACACCAGCCTACAGAAAGAGGTGCAAGATTTTACCACCAGGGACCTGGATATTCAGGAGGTACCCCCAACACCCCTTTTCATCCCGTGCGACCACTGCATTGGCACTGGCTCTGTGGCCGTGAAAACCTGCCTGACCTGCGACGCCTCTCTCTGCTCCGCACATGTGGAGCTGCACTTGAAGAAAGTTGCATTTCGGGAGCATACCGTCATCGAGGTGACAGGCAACCCCTTTTCCTTCAAGTGCTCTGAGCACCGAGAGGAGCTGAAGCTCTTCTGCCAGGAGGATGGCGTGTCTGTGTGCTCGCTGTGTGTCGTGATTGGATCGCACAAAGATCACCAAGTTGTGACTTCGCAGGAAGCATGCACGGAGATGAAGAAACTCGTGGAGGATAATTTGACACGGTTGGTGGAGAAGCGCCAAGCCGCAGAAGAATCAATGAGGGGATTGGAGTGTTTGTTTAGCGAGACCGCGTCCCGGACAGCTGACTTTAGAGAAAGCATCCATGAAAAGTACAgcagaatgaaaaagctgatcgAGGAAGATGAGCAGCTGATCATGAACATTTTGGAAGCTGAAGAAATGTATTCTCTGAAGCAGCTGGAGTGTAAAAAGGAGGCGGTGGAATCTCAGATCAGGGAGACGGAAGTGCTAATGAATACCAGCAAGTCGCTCATGCAAGAACCAAACACTTTGACATTCCTACAGGATCCAATATCTCCGGCATCTTCATGGTGTAGTATGGCGAAAGACAATGCTGAATCTGCAAAGTTTAAAACGGTAGAAAACCTAGTGGAGGAATTATCCAGCACTATATCGTGTCACCTCCCAAGAATGAATGTTACCTTCAACCCTTACACAGCTCACCCTAAACTCAAGGTTTCTCAGAACAAGATGGAGGTCCGCTGGAGTAAACAGCCCCTTCAGCACAGTGACAACTCGGAGAGGTTTGACTCTCAGTACAGCGTTCTTGCAGAGAACAGTCTCACTGCTGGACGCCATTACTGGGAGGTCTTAGTGTATGACAAACCATACTGGCTGATCGGAATAGCTTATGCTTCAATGCCAAGAAAAGGTGGGAAAAACCTGAACTTTACCAATTTAGGGATGAACAAAGTTTCATGGTGTGTTTACCACAGCAATGGACAGTACTTGGCCTGCCATGACTCTCAAGAAACAGTCCTGTCAGTTCAGGGGAAACTGGACAAGCTGGGTGTCTGGGTGGACATTGATAACCAAGTCCTGTCTTTCTACAATGCTGATACTCTAACTCAACTCCATTCCTTCTCAGTTCAGTACTTGGAAGAGGTCTATCCAGTGTTCAACCCCTGCATTGACGTCAATGAGAAAAACTGCCAGCCCTTCACGCTATTTCATCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178367 lncRNA downstream 251837 16653691 ~ 16656167 (-) True G141795
TU178296 lncRNA downstream 409563 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA downstream 409563 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA downstream 409563 16494838 ~ 16498441 (-) False G141740
TU178234 lncRNA downstream 846966 16008063 ~ 16061038 (-) True G141704
TU178459 lncRNA upstream 1559 16914938 ~ 16919500 (-) True G141871
TU178467 lncRNA upstream 24255 16937634 ~ 16938046 (-) True G141879
TU178713 lncRNA upstream 1373624 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 1391252 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 1392983 18306362 ~ 18306683 (-) True G142066
AMCG00003272 mRNA downstream 29872 16863943 ~ 16878132 (-) True AMCG00003272
AMCG00003271 mRNA downstream 45280 16853455 ~ 16862724 (-) True AMCG00003271
AMCG00003273 mRNA downstream 78553 16826205 ~ 16829451 (-) True AMCG00003273
AMCG00003275 mRNA downstream 86984 16799690 ~ 16821020 (-) True AMCG00003275
AMCG00003269 mRNA downstream 109815 16788231 ~ 16798189 (-) True AMCG00003269
AMCG00003279 mRNA upstream 68490 16981869 ~ 17071511 (-) True AMCG00003279
AMCG00003278 mRNA upstream 220730 17134109 ~ 17138040 (-) True AMCG00003278
AMCG00003280 mRNA upstream 295056 17208435 ~ 17263614 (-) True AMCG00003280
AMCG00003283 mRNA upstream 379137 17292516 ~ 17304410 (-) True AMCG00003283
AMCG00003287 mRNA upstream 399185 17312564 ~ 17325306 (-) True AMCG00003287
TU178404 other downstream 159573 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 1790487 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 2233584 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3477680 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 2630269 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 2639492 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 2642064 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 2652016 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 2653534 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile