RNA id: AMCG00003270


Basic Information

Item Value
RNA id AMCG00003270
length 1654
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00003270
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16728914 ~ 16737927 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGCGAGTGAGACTTCACAATGCTAAGCAGGATCAATCAAAAAAGTTCAGGTTCAAATACAGTTTTCTATGTGGTGCCTAGTAAGGAGAAGCAGACGTCTGGGTATTTGTTAAAATCCCCACCATTGAGTCGTTTTAGATCCTACAAATCATGGAAAAGGCGATACTTCGAGCTCTCCCAAATGAGTGAGAATGGCCATGTGCTGAAGTACTACAAGAGCAAGGAGGAAAGAGACAAAATATCTGGGGAAATAGACATATCTCAAATCACTTTGATATACCTGAGCCCTGTCAACCATGGGAAATGGAATTGGATTCAGAAGACGTTCAGGTGTTCGTCTGACATGGTGCTGTTCGCCCGAGTATCAGATAGAGATTATTTTTTCATCGGAGAAAGCAAGGAGGATGTGGACCGCTGGTACAATGCCATATTCAATGTCCTGAAGTCTAAGTCAGAACAGGAACATTGGAGCCCCGAGAAACTGGAGAAACTAACAGAGAGAACGAATTGGCCCTCCAGAGGAAGCTTCGGTGATGAGGACTCACTTGAAGATCCAGACGGGGCATTCGTCCCCTTTCACCCAACACAATCCAAAGCAAGATCCATTTCTGAGCCGATCATGAGAAGAACCTACATTTCCGAACACTATGAGGTGAGCCATTTAGGATGTATACCAAAAACATTCATAACAGAATTCTGGTTTTTATGCAATCTTAAAAGAGCTACCAACAAACTAAGgGACAAAGAGGAATCAAATGACAATCTTTCAACTAAGGTTACCTCGGCATGTCAGGAACTTGAATCCCATAGTAATTCAATAAATGGGGACCAGCAACTTCAGACTGAAAGAAGCTTTGAGGAAATAACTCTGGTGGAGAAGGACGTGTATGTAACCCAAAATGATCTGAAGAATTACCTCACACTCACTGAAGTAGATGGAATACCGTGCATTGCCAACTGGCCTGGCCTGCCAATTACTGAGTGTCTGTTTCACAAAGGAGACCAGATCCTCGCAGTTAACGATCTTCAGACACAGAGTGTGGAAGAGGTGCAGTTGTACCTGAGCAAACTGATGAAGGCCGAGGTTAAAATAACAATTCGGAGGGAACCAGGGTCACAGGCTTTCCATTCTGAGGCATGCCCCTGTGACTGAGAAGTGGAGTTAACTTTGTGAGACAGTTTAACCCTTAGAAATGCAGCATGACATACAGGGGCCTACTAAATTGGGATTGTATATTTGGATCAAGCCTGTTGTGACATCATACTCTGTTCTAAAGAAGGAAGTGAATAAGATCTATTATTCTATTCACAAGAAGGGGAACTACTTAACttctgaaaacaataacaaatctTCAAGAcgtaattgaatggtatattgcttttttaggtaaattaaggattcaattaagcaattaagaccttggttggaacaaaaaccagcagggcaggggatactccaggaccagtttgaaaacccctggtttAACTTAATCACTCAATAACATTGTTCAAATAAAGGGAGTACGCAATTTTAACTACAGCTGTAACTCGACCACACCAAGCATTGTCTGTACTtttgaatgtatatatgtaaatattgtataagTTGTACCTCCAAATGATTaaataacttcaaataaaaatccttacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178367 lncRNA downstream 72747 16653691 ~ 16656167 (-) True G141795
TU178296 lncRNA downstream 230473 16494838 ~ 16498441 (-) True G141740
TU178297 lncRNA downstream 230473 16494838 ~ 16498441 (-) False G141740
TU178300 lncRNA downstream 230473 16494838 ~ 16498441 (-) False G141740
TU178234 lncRNA downstream 667876 16008063 ~ 16061038 (-) True G141704
TU178459 lncRNA upstream 177011 16914938 ~ 16919500 (-) True G141871
TU178467 lncRNA upstream 199707 16937634 ~ 16938046 (-) True G141879
TU178713 lncRNA upstream 1549076 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 1566704 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 1568435 18306362 ~ 18306683 (-) True G142066
AMCG00003266 mRNA downstream 18055 16681053 ~ 16710859 (-) True AMCG00003266
AMCG00003276 mRNA downstream 62984 16664740 ~ 16665930 (-) True AMCG00003276
AMCG00003277 mRNA downstream 108354 16615320 ~ 16620560 (-) True AMCG00003277
AMCG00003274 mRNA downstream 138081 16566771 ~ 16590833 (-) True AMCG00003274
AMCG00003255 mRNA downstream 362928 16347424 ~ 16365986 (-) True AMCG00003255
AMCG00003267 mRNA upstream 11822 16749749 ~ 16757177 (-) True AMCG00003267
AMCG00003269 mRNA upstream 50304 16788231 ~ 16798189 (-) True AMCG00003269
AMCG00003275 mRNA upstream 61763 16799690 ~ 16821020 (-) True AMCG00003275
AMCG00003273 mRNA upstream 88278 16826205 ~ 16829451 (-) True AMCG00003273
AMCG00003271 mRNA upstream 115528 16853455 ~ 16862724 (-) True AMCG00003271
TU178070 other downstream 1611397 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 2054494 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3298590 13427294 ~ 13430324 (-) False AMCG00003164
TU177541 other downstream 3298590 13427294 ~ 13430324 (-) False AMCG00003164
TU177373 other downstream 3849493 12861426 ~ 12879421 (-) True G141004
TU178404 other upstream 10134 16748061 ~ 16748431 (-) True G141826
TU178860 other upstream 2805721 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 2814944 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 2817516 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 2827468 19565395 ~ 19566587 (-) False AMCG00003320

Expression Profile