RNA id: AMCG00003285


Basic Information

Item Value
RNA id AMCG00003285
length 2982
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00003285
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17363794 ~ 17375154 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATTCCTTTCTGCAGAGACCCGGCGAAATGGCTCTTGCGGTCATGAAAAGACCAGTCTCGCATACAGGGATCCTATCCAAACTCCCTGAGATACAGCACCCCCTGGCAAGACTTGGGGATCCCGACTCTTTCTCCGTGGATGGCTTTGCCACTCAGGGTGCCACAGGACGCAGGGATGTGCAGTCTGCCTGCTGGGACCGAACACAGAGAAGAATTAGGGTGGAAAAGGAGTGTCACCCCTTGCTGGAGGACATcgtgaaaaaatataaatttaagaAGCTGGACAGCTGGAAAAAGGTGGATCAGTGGATAAATTTGGGTGACAGAAAATGGTCGGATGGTGGAAGTGTGACACAAGGTGGAAGTCTTACCTCTTGCCGGCCTGCAACCCACACTCAGCTGCAGATTGAGGAGCTGGAACTCCTTCTCAGTGATAAGATCAAATCAGGTGgattttacactttaaaaagacTGTTCATGTCTAATGATCCAACAGGCAAAGGAAATGTATCCagggATGTCCTTCTTGTTATCCTGACAAAGTTTTTGGGGAGATTTATCAGTAGAAAAGAATTCTCTTCTCTTTTAGGCAGattaaacttGGCAGAGAAAAGCACCGTCCCCTTTGACAACTTCTGTCGCTGCGTAGGAAAACGGCAGAGTGGAAACGAGGTTGAAAGGAATGCTCCGATAAAAAGAACGCAGGAcactaaaaagaaaaacgcaatcCAAGCTCATTTAGCACTCAGGAAATTAGCCAAGGAAAGGCCATTTGAAATGCGCAGTTTATTTGATGAGAAGGAGGAAGCTCCACTACAGCCATCAGACTTGAGAAGAGTTCTGTGTCAGCTGGGGATACAAACATGCAATGAGGAATTTGACAAACTCTGGAAAAGGTATCACAAAGAAGGAGGGATTGCCATCACTGTAGAGAGTCTAATGAAGACTCTAGGGTCTGAAGCCCCAAGTCCTGCTAAGGAACGGAGGAGTCGTCTGCTCTCATCTCTCAGCAGGATGTCCAGTGCTTCCCTGCCTCGGGACGGGCCAAAACTTGCAGGTGAAAGGCCTTCAAAATCCCAGCAGGAGAGAGATCTTTCACTGCATGTGGAGAAGTGGCTTAAGGAGAAATTCACCGAGGGATACAAGGACATGATGGTCGAGTTTCGGCGCTTTGATCCAAAGAACTCCAGAAAGGTATCCAGAGAAGACTTCTTGCAGGTTTTGGGGAGGTTCCATCTTCACTTGAAGCAGGACCAGCTCAGCCTCTTCCTGGCACGCTGCGGCCTGGACGACACCTCCCCTGATGTCAACTACGAGGACTTTCTGCTTCAgTTTAACCATGTGAGGAGCCTGAGTGATTATTCTACACTTTCTGCTCTGGAGGCAAAGCTCTTAAACATGCTGCAGACAGACTTCCTTTCCCTGCTGCATGAATTTCACAAAATGGACACAGGAAAACTGGACACCGTGAACCAACAGCAATTTAGATCAGCTATCGAGAGGAGATTTTCCATGAAAATGACAGGTGAAGAATTTGAATGTTTGCTGGAGAAAGCACCTCTTGACAAACATGGAAACATAAGATACTTGGAATTCCTGAACATTTTCAACATGAGTAGAGATGTGAGCAGTGTCTTAGATGATGGAAGAACGGTTGTGACCCATTTTAGCAGGAAACCCCACAATACTGACCAGAGAAAGAGCTTCACAGAGGGAACAAGAACCAATCTCCAGCTGACTAAGAAAATTAAGGACCTTGTGAAAGACAACTATGAAGAAGTCGAGAAAGCCTTCAATGACCTTGACGAGATGAACACAGGACGGCTTTCCCAAGACACCCTGTATCAGCTCCTGAAACGATTTCCAGTGCATCCTCCCATCTCCAGGGCAGAAGTTGGGCAGCTCTGGAAGACTCTGATAAGGAACCAAGATGACACACTAGACTTCCTTCACTTCGTCCGCCATTTTGTTTTCTCGCGGTCCTCGGCCTGCTTCCAAAATTCCAAAAGAGTGCCTCCATTGAAAGGGGACAGTGACTTCCTGATCAGATCCCGGAAACTAAACTCAGACACAGAGATAACTATGGATCATCTTTGTGCACAGGTTCAGCTTCTGCTTGATGATCTTCGGACGCAGTTCCAGGAACTAGACCCAGACGGTTCAGGAACTGTTACTCAAGAGGAATTTCAAGATGTACTGACTGACCTTTGCCGAGAGTTAACGGCCACCCAATGCAAAGCTATTGCCTCGAAGTTCAGCTGTAGGGGAAACAGgACTTCATATGTAGATTTTCTTCATCCATTTGAAGAGCAAAAACAAGACTTCAAAGTTTCTCCCTCCAAAGCTGTAACCCAGAGGCCAGAGACCCATCTCCCAGTTTACAGTGAGACCACCCTGAAGGGTTTAAACGGCATCACGGAGCAGCTGCGCCGGAAGcTGGCTGGAGACTGGAAGTCCCTGCAAAGAGCCTGTAAGAAGCTTGACAACAGTGGCTCCGGATACCTCTTGCTGCCTGAATTCAGATCCGTGCTGAAACTCTGCAATGCTGTGCTGGACGAGGAGGAAATATATCGCCTCATGTCCCATTTTGATAAAAATATGACCGGGAAACTCAACTATGCAAAGTTCATTGATGAGACCGTGAAGAACAGTTGCCACTAAAATGGTGCCTTTCACCTAAGAAACCACAGCCACAAAAGACATCATGTACCTCAAACAGTTACGATCATAAATCATAGGTAGATCATCAAAAACCTTTCCTTTTGCAGGAAAGTAGCGCTTTCAGTCgttaatgcattttttgtttagtaATGCTAATTGccaaattgtttttttcaagaaatgaaacaaaatctaAACTACTATTCTGCTGATTATCCTAACTCTGTGACATCCCAACTTGTGATGTTTTTCCACTGTGAAAACACACAGGTTTTCAGAGCCATGTATCTCCATTGATATTGGTCTGCTTTCATCATAGG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 425748 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 444294 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 707627 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 865353 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 911849 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 929477 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 931208 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1460386 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 2173487 19548641 ~ 19548932 (-) True G142176
AMCG00003286 mRNA downstream 2977 17357003 ~ 17360817 (-) True AMCG00003286
AMCG00003287 mRNA downstream 38488 17312564 ~ 17325306 (-) True AMCG00003287
AMCG00003283 mRNA downstream 59384 17292516 ~ 17304410 (-) True AMCG00003283
AMCG00003280 mRNA downstream 100180 17208435 ~ 17263614 (-) True AMCG00003280
AMCG00003278 mRNA downstream 225754 17134109 ~ 17138040 (-) True AMCG00003278
AMCG00003288 mRNA upstream 81359 17456513 ~ 17457186 (-) True AMCG00003288
AMCG00003289 mRNA upstream 82049 17457203 ~ 17457505 (-) True AMCG00003289
AMCG00003290 mRNA upstream 301469 17676623 ~ 17677846 (-) True AMCG00003290
AMCG00003292 mRNA upstream 313259 17688413 ~ 17702982 (-) True AMCG00003292
AMCG00003294 mRNA upstream 350906 17726060 ~ 17742906 (-) True AMCG00003294
TU178404 other downstream 615363 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2246277 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 2689374 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3933470 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 2168494 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 2177717 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 2180289 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 2190241 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 2191759 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile