RNA id: AMCG00003287


Basic Information

Item Value
RNA id AMCG00003287
length 2049
RNA type mRNA
GC content 0.48
exon number 20
gene id AMCG00003287
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17312564 ~ 17325306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTGCATTTTCCAGATTTTATTTACTCCGCTGCCCACCCCTGCCATCTTTGGACTGTTCAGCCTTGGGGCTGCCATCCTGATCTGGTTGGTGACTCGACCCAAACCCCTCAATCCCCCGGTAGACCTCAACAGACAGACTGTGGGAATCCAGGATGGTGCAAGACGAAGCGCGTTGCTTAAAGATGACACCCTCATGtcatattattatgatgatgccAGGACATTATATGAAGTGTTCCAGAGAGGCCTGCACGTGTCAGGAAATGGACCGTGTTTGGGTTACAGAAAACCACGACAACCTTATCAGTGGCTGAAATACAAGCAGGTGTCTGACCGAGCTGAACACTTGGGTTCAGGGTTACTACAGAGAGGACTGAAACCATCTCCTGATCAATTCATTGGGATCTTTGCCCAGAACAGGCCAGAGtggATTATTTCTGAGCTCGCCTGTTATACCTACTCCATGGTGGCAGTTCCACTCTATGACACACTGGGCCCTGAAGCGCTGgtgttcataattaaaaaagCTAAAATATCCACTGTGCTGTGTGACAATCCCGACAAGGTTGAAGCCCTCCTGGGGAACTGTGAAAATAACCTCATGCCTGTCCTCAACACCATTATAGTCATGGATCCTTTCAGCACTGAGCTGAAGGAGAGAGGGGCGAAGTGTGGGGTCGAGATCCTCTCTCTAAAGGAAGTGGAGGCTCTGGGCAAAGATAACCTGAGGAAACCAATTcCGCCGAAGCCAGAAGACCTGAGTATTGTATGCTTCACAAGTGGAACAACTGGTGATCCTAAAGGAGCCATGCTAACCCATGAAAATGTTGTCGCAGATGcttctgcttttattaaaaacactgagACCAGCTTCGGCCCTGTTCCTCAGGACATCTCCATCTCATACCTGCCTCTGGCGCACATGTTTGAAAGAGTGGTCCAGACGGTGATATATAGCAGTGGGGCCAAGGTGGGCTTTTTCCAGGGGGATATCAAACTGCTTCCTGATGATATGAAAGCTCTGCGGCCAACAGTCTTCCCTGTGGTGCCACGGCTGTTGAACAGAGTGTATGACAAGGTTCAGAGTGGAGCCCAGAAGCCGTTTAAAAAGTGGTTGTTGAACTTTGCCGTAGAAAGAAAACTTTCCGAAGTGAAGCAGGGAATCATCCGAAATGACAGCATATGGGACAAGCTTATCTTCCACAAAGTTCAGGAAACCATGGGAGGGCGAGTCCGTGTGATGGTAACAGGGGCTGCTCCCATCTCTCCCACTGTCCTCAGCTTCCTCAGAACTTGTCTAGGATGTCAGATTTTTGAGGCCTATGGCCAAACCGAGTGCACAGCTGGCTGTACCTTCACAATGCCTGGTGACTGGACAACAGGACATGTTGGAGTACCTGTCCCTTGCAATATTGTTAAATTGGTTGATGTCGAAGAAATGAACTATTTCGCATCCaacggagagggagagGTTTGTGTCAAAGGCAAGAATGTATTCAAAGGATATCTAGAAGACCCAGAGAAAACGGCAGAGGCTCTTGATGAAAAAGGATGGCTGCATACCGGTGACATTGGAAAGTGGCTTCCTAGTGGAGTCCTTAAAATCATCGACAGGAAGAAGAACATCTTCAAACTGGCACAAGGAGAGTACATCGCCCCTGAGAAGATAGAAAATATATACGTGCGGAGTGGGCCTGTAGCTCAAGTCTTTGTGCACGGAGACAGCTTACAGTCCTCTCTGATAGGCATTGTGGTACCGGACCCAGAGGTGCTTCCTGATTTTGCTGCAAAATTAGGCATCAAGGGTACTTATGAAGAGCTCTGCAAAAAAcagGAAATCAAGAAAGCAATACTCTCAGACATGGTGAAGCTGGGAAAAGAGGCTGGGCTCAAGTCTTTCGAACAGgTGAAAGATTTGTATCTTCATCCAGACCAGTTCACAATTGAAAATGGGCTTCTGACACCGACACTCAAGGCGAAAAGAGCGGAGCTTACCAAATTTTTCAAAGACCAAATTAACAGCCTTTACGCATCAATCCAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 374518 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 393064 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 656397 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 814123 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 961697 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 979325 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 981056 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1510234 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 2223335 19548641 ~ 19548932 (-) True G142176
AMCG00003283 mRNA downstream 8154 17292516 ~ 17304410 (-) True AMCG00003283
AMCG00003280 mRNA downstream 48950 17208435 ~ 17263614 (-) True AMCG00003280
AMCG00003278 mRNA downstream 174524 17134109 ~ 17138040 (-) True AMCG00003278
AMCG00003279 mRNA downstream 241053 16981869 ~ 17071511 (-) True AMCG00003279
AMCG00003268 mRNA downstream 399185 16908004 ~ 16913379 (-) True AMCG00003268
AMCG00003286 mRNA upstream 31697 17357003 ~ 17360817 (-) True AMCG00003286
AMCG00003285 mRNA upstream 38488 17363794 ~ 17375154 (-) True AMCG00003285
AMCG00003288 mRNA upstream 131207 17456513 ~ 17457186 (-) True AMCG00003288
AMCG00003289 mRNA upstream 131897 17457203 ~ 17457505 (-) True AMCG00003289
AMCG00003290 mRNA upstream 351317 17676623 ~ 17677846 (-) True AMCG00003290
TU178404 other downstream 564133 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2195047 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 2638144 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 3882240 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 2218342 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 2227565 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 2230137 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 2240089 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 2241607 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile