RNA id: AMCG00003292


Basic Information

Item Value
RNA id AMCG00003292
length 3937
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00003292
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17688413 ~ 17702982 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTAGTACTTTAGGAAAAGACAAAGACTCAAAGGAAAAGGACCCCAAAGGTCCTATGggaaaggaaagggaaaaggAGGCCAAACCCTTGAGCAGCTTCAGTAAGGATGGCAAGGAAACCAAGACCAAAGGGAAGGATGCCAAAGAAGGAAAGAAGGACAACAGTGCAGCACTGCCTGCAGTGGCCTTTTCTGTTGACAACACGATAAAACGGCCAAACCCGGCACAAGGGACTCGCAAGAAAACCAATGCCGAGGTGATCAAAGAGCTGAATAAGTGCCGGGAGGAGAACTCCATGCGTTTGGACTTGTCAAAGAGGTCCATACACATACTTCCCACAAACATCAAGGAGTTGAATCAGTTGGTAGAACTTTACCTGTACAGCAACAAGCTGCAGTGTCTGCCCGCCGAGGTGGGCAGCCTGGCAGGCTTGGTGACTCTGGCCCTGAGTGagaactccctcaccagcttGCCTGACTCTCTCGACAACTTGAAGAAACTGCGAATGTTGGACCTCCGGCATAACAAACTGAGGGAGATCCCACCAGTGGTCTACAGGCTGACGTCCCTCACCACCCTTTATTTGCGCTTTAACCGCATCACTACGTTATGTAACCTCATCACACTGGACATAGCTCACAATCAGCTCGAACACCTTCCGAAAGAGATTGGAAATTGCACACAGATCACTAACCTAGATTTACAGCACAACGAGCTTTTGGACCTTCCTGAAACTATAGGTAATCTGTCGAGCATAAATCGCCTGGGTCTGCGATAcaacaggctgtcagcaatCCCCAAATCATTAGCAAAGTGCCGAGAACTGGAAGAGCTCAACCTGGAGAACAACAACATCTCTGTGCTACCAGAGGGTCTTCTGTCTAGTCTGGTGAACCTGACAAGTTTAACACTGGCCAGAAACTGCTTCCAGTCCTACCCTGTGGGCGGCCCCTCACAGTTCTCAACCATCTACGCCCTGAACATGGAACACAACCGCATTAATAAGATCCCCTTCGGCATCTTCTCCAGGGCTAAAGACAATCAGCTGACTTCCCTCCCACTGGACTTTGGAACCTGGACCAGTATGGTTGAGCTGAACCTGGCCACCAACCAACTCACAAAGATTCCCGAGGACGTGTGTGGTCTCGTCTCTCTCGAGGTTCTGATCCTGTCAAACAATCTGCTAAAGAAACTGCCCCATGGCATCGGCAATCTGCGCAAACTGAGAGAGTTAGACCTGGAGGAGAACAAGTTGGAATCTCTGCCCAATGAAATTGCTTATCTTAAAGATTTACAGAAACTGGTCTTGACCAATAATCAACTGAGCACCTTGCCCAGGGGGATCGGTCACCTCACCAACCTGACGCACCTGGGCCTGGGAGAGAACCTCCTGCAGCACCTCCCTGAGGAGATAGGTACACTGGAGAACCTGGAGGAGCTGTATCTCAATGACAACCCCAACCTTCACAGCCTTCCCTTCGAGTTGGCCCTGTGCAGCAAGCTGTCAATCATGAGCATCGAGAACTGTCCCCTCAGTCACCTGCCACCTCAGATTGTCGCTGGGGGCCCATCCTTCATCATTCAGTTCCTGAAGATGCAGGGTCCGTACCGTGCCATGGTCTGAACGCCCAATCCTCTGTGTCATACACTGTAAAAACtagaaaagaaatgcattattgttGTCATGAATATCTATCTGAGAAAAGGTAATTTTAATAAGACTGCATTACATGTTTCTGCTAATAGAGGAATCATAGCCATTtagagtttttttctttttcttttttttaaatcatgaagAATCAAGAGGAATTGCTTGTGTAGGCTTTCTTTGCCAGAAATTAtagatgtatattaaattaccAACTGTTGAATGGCagttttctttcaatttaaaaaccgTATTGCCAACAAAGTTTCAGTAATTAAACCTAATGGATTACAGATGGCTGTTATGAGTAGAAAAGaaactgtacaaaaaacaaattgtatatatattttttattgatttcctttttagggggggggggcttttaACTGCTGCCATAACCCTTGTGATTCCACTGTCCCCAGACTAAGTGTatgattattgtgttttatggtGCAGATTATTTACCTAttaggaaagaaacaaacatgcgCTGTtgctatttaatttgtaaagttTTAAATGCAGGATCTCAATTTCAGTGCCTATCAAGGGAGAAAAACGCTGATGTGGATAGTTAAGTAAGCCTTGTACCCATCATCAGCTTTTAAACTTCTTACAGAGCTATGAGTTTCCCTTCTCTTTCAGccattggttttatttgtttgctgtacttttattatttttagaaaaatctCCCCTAAAACAAGTAATCTGATTCAAAAGTTAAAATCAGTATCGAAGTTGCCTACATCCACTGATATTAATAGAAAAATccgatttactttaaaaaataataatttaaatgattagAATCATTCTTAATTGTTCACATCCATTCTTTTCAGTTGTTGTGATGGGAGTGTCACCAAAACATTCAGTGGGATGTGTTTGCAATTCAGCCTGATTTTACAGATCTATAATATATCAGGCACATAACCAAATCATACTGATTGGTTACAAAGTGAATGGGTGGTGGGGTGCGTTCATTGCCCTCTTGAAGTTCGTTTTAAATCTTAAGGGTTTGGCTATATTACTGTTGTCATAGTAACAAAATGAAACGGCGCATATCACCCTAAGGAACCAAATCACAACGTTCCTTGGATTCCTATTAAAGTATGGCAAATGCTATTTGTAAGGTTATGGCCTTTCCAGAGAGACATTAAACAGAGCACAGTTTATTCTGagctttctattttatttaaactaccATGTTGTGTTATAACCCTTTACTTTTACGAAAAAGTGTTCTACTTGTGCATCACCAGATCTGAAAGCTGAGGTGTGTCGAGCATGCCATCTTTACCCTTCCCCATCATGCTGCTGTTTTGTAATGCACTTTTTTTAATAGTTCTGGCATCAGCCTTTAAATGATTCTATACTGATTGGTGGAAATTATCCCTTTACTGGTTATACATGGAATTGgggcattttgtttattttaacatgggatttatgttcagttttcttttaataagcAATTTATATTGAACTTATTTTTGCAAGTGTTTATAGCTATTTTAATATATCACATAAATCCTTCAGCTGCCTCaactaaacaaatgttaatGCTGGAATGATATATATTCCCTTGGATAAGCTTGGGGTGAAGGTTTTGTTCAATATGGCTGAACTCCATACACTTCAACTTTTAAAGTCATAAAAAGGTTTGGTAATGCATGCTGGAACAGAACTGAAATACCCATATCAATCTGTAGACAATAGACAACACGTATAATGAATTTAAGTATTGCAATTGAAAATCACACTATTGTTTAAGCAAAAAGCCAAAATCAGctaattattggtattttttgtattgcgTATGATGCATTATGATTAGTATTATGTCAAAGTGACTGTACATAAACCCAACTTTAGtttctaaacttttttttccccctcatgtaaatgtataatacagCTATGAATGGATGACTAATTCTTTCATGTCATTTTGATCAttgtttactttcttttttacatGTACTTGTAAATGGCAGCAGCTTATGCTGGGTTTTTGTGCGGAAAAGGTTTACGACAGCGCTTCATCTACAGAGGTCATGTGTGACGAGGTGAGAGCACACCCCTTGTTGGTATGGGACATATATTGCTGCTTATTTGTACCAACCAGAACTCATTGCTGCTTTATGAACTCTTGAACATATGCTGTAAGAGGTGAAGGCAAATCCCGATGCAGACTCATTTTGTAGTCTGGTCACTAAAGCCATTGTCTGATGCATGGTCAGGCTCAGTGGCTGTAACCGATCAAATGATTTGGACAGGA

Function

GO:

id name namespace
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0000164 protein phosphatase type 1 complex cellular_component

KEGG:

id description
K19613 SHOC2, SUR8; leucine-rich repeat protein SHOC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 750367 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 768913 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1032246 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1189972 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 584021 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 601649 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 603380 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1132558 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1845659 19548641 ~ 19548932 (-) True G142176
AMCG00003290 mRNA downstream 10567 17676623 ~ 17677846 (-) True AMCG00003290
AMCG00003289 mRNA downstream 230908 17457203 ~ 17457505 (-) True AMCG00003289
AMCG00003288 mRNA downstream 231227 17456513 ~ 17457186 (-) True AMCG00003288
AMCG00003285 mRNA downstream 313259 17363794 ~ 17375154 (-) True AMCG00003285
AMCG00003286 mRNA downstream 327596 17357003 ~ 17360817 (-) True AMCG00003286
AMCG00003294 mRNA upstream 23078 17726060 ~ 17742906 (-) True AMCG00003294
AMCG00003293 mRNA upstream 44307 17747289 ~ 17771350 (-) True AMCG00003293
AMCG00003297 mRNA upstream 114557 17817539 ~ 17823740 (-) True AMCG00003297
AMCG00003298 mRNA upstream 122952 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003296 mRNA upstream 146798 17849780 ~ 17856520 (-) True AMCG00003296
TU178404 other downstream 939982 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2570896 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3013993 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4258089 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1840666 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1849889 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1852461 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1862413 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1863931 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile