RNA id: AMCG00003293


Basic Information

Item Value
RNA id AMCG00003293
length 5709
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00003293
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17747289 ~ 17771350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGTCTGGTGCCGCTTCATCGGGGCATCAGGAAAAGAAGCCCTTCCCCATTGGTAGTCAGCTTAGCGGGGGAGGCCATAACCCCCTGCTCTTGTCCCCAGCCAGCCTACAGCTTGctcagcttcaagcacagctcaCTCTGCATCGACTGAAATTGGCCCAGACGGCTGTAAACAGCAACACGGCAGCAGCTGCCACCGTTCTGAATCAGGTTCTCTCCAAGGTGGCTATGTCTCAGCCCTTGTTTAACCAGATAACTTCATCCATGGTCAGCACTCCTCACAACCACGGTGGTGGGACGCAGCTGTGCTCCGGGATGTCAGTGGGCAGGTTCGCCTCCAGCGGACTGCCCTTCCCACATCAGAACTCAGCTCTGGGGCCTCTAGTGAGTGGAGGCCTAGGATGCAGCGGCAACCTGCAGAATCAAACACCCGGTGCCGTCGGACTGCACCCTTACGGAGGTGCTTTGTCTCAAGTGTCTGGCCAGCACACCTCAGGATACGGAAATAAAATCAGCCTATCCACTAATACCATGTTCCCTTCGGACACTGACAGGCGCGGCCAGTATGGGTTCCTGAGTGGCCCGCCCAACACAGCAGGGAAAACCAGTGAGGGGCCCTTCTTGCCTTCTGGTGCTCAGTCACAGGCAGGGAGCCAGGGTGGGTTTCAAAGAGACTTCTATGGATCTGGCACTCAGGGGCCACAGGGCATGGGGAAACAATCTACCTTCTCTGGAGAGCAGAACATGAACGCCTTTCAACCAGGTGTCCACAATGACCAGTGGCAAAGCCAGGTCAGGTTCCCCAACCCCACTAAGCTGGAGGCATCTAATCAAGGGAGTGCGTGGGTGACCTCCAGCCAGCCATTCCACATGAGGGGCGAGCTGTACAACCCAGAGGAGCCCACCCCTGACTCCAAGTTCAACTCCACCACCGGGACGCCTTATAGCAGCAACACTCAGGGGTTTGTGGGATACCAGCAGCTGCAGCTGGGAGAGGACACCCCCTCTGGAGGCCCCATGCCTCTCCAGCCTCACCAGGTCAACGATTTCCAAGCAGTGACTCCGGCACACCTGCCACACCAATGCACCATCTGTGAAAAGAAGGTCTTTAATCTAAAGGACTGGGACCAGCATGTGAAAGGGAAGCTTCACCTCCAGAATCGAGCTCTTTTCTCAGAAGGCTGCACCAATGAGATCACAGCCCTTGTCAGGAATTGGATTTTCATCACCTCAGtcagggtcaaagGAGAGGAGCAGGGGTTGGGGGTGGTCATGTCACAGATCGGCAGGGATTTCTATACTTGGCGATCCGAGGGGATTAGCGACAAAGGGGGCTGGGTGTCGGCTGGAGTCCGAAAGCCTTCTGTTTTTAAGTTCCCTCAGAGGAAGTCCCCCCCAGGCCGAGTTGTGCATATCTGCAATCTCCCAGAAGGCAGCTGCACTGAGAATGATGTCATCAACCTAGGCCTTCCCTTCGGGAAAGTCACCAACTACATCCTCATGCGGTCCACTCACCAGGCCTTTTTGGAAATGGCTTATGTTGAAGCAGCTCAGGCAATGGTGCAATACTACCAACAGACTCCCGCCACAATTAATGATCAAAAGCTGCTGATCAGAATGTCAAAACGTTACAAGGAGTTGCAGCTGAAGaaaCCAGGAAAGGATGTAGATACTATTATCCAAGATATCAACTCTCAGAGGGAAAGAGATGGGATGCAGGAAGTAGACCGATACCCCCCAGAACGCACCAGGTCCAGGAGCCCCATTAGCCGCTCCCTGAGCCCGCGCTCCCACAGCCCCAGCTTTACCTCCTGTAGCTCCACGCACAGCCCCCTGGGACCCTCACGGGCAGAGTGGAGCAACGGCATGGGTGAGAGAAGGGCATCCTGGGACTGGTCCCCTCACACTcgcagggaggaggagagggatgAGGCCTGCTGGAGGAACGGGGACGAGGAAAGGCAGGACAGCTGGATACAGGACAGGAGGAAGCCCTACCTGAAGATGGTGGACAGGGTGAGCCCCAGGTCTGCAGAGGAGAGGGGGGTAGCGCTGAGGGGGAGCAGGGAGAGGTACACACGAAGCAGCCCCCAGAACCCGTCCTACTCTTTGTACCGCTGCAAAGAGGACGACTTCTGCAAGAAGGAGCTCAAACACAAGTCTGACCGCCCCCCCAGGCCGCCGCACCAGCGCCACGAAGCCAAGACGAAGAAAAGGGATCCGGAGGAACATCACAGGCCGAGATACTCGGATGGCGAAACACAGGAGGACACCAGCGGAGCCGCCAGGACGTCAGAGGACAGGAGGCAGGCCAGCACAGAGAGGGGGCGGAATAAGAAGCCACACAGGAAGTTGGCCACAGAGAAGGAGGAACAAGTATCAGAGAGCCAGgtAGAGCAGCAGCTACAGGGTCAGGCATTGTCCCCTAACCGGAAAGGCAAGCGAACTGATGAAGCAGATGAGGATACAGGCAAAGAAAATCAGaCGGAGGATGGGGAGAGCGGGAACGAGACGGAGGGAGAGTCGTGGTACCCCCGCAACATGGAGGAGCTGGTGACGGTGGACGAGGTGGGTGAGGAGGAGGATTACATCATTGAACCCGACCTCCCCGAACTGCAGGAGGCCGTCGAGGCTGAGTATGAGTCCAGTGAGGCATCCAAGACTGCAGCCGGTGAGAAAGCCACCCAGGCCCACAGTGACGTATGTCAGGTGGCGAAGGGCACTGAGATAGAAGTGGAGCTGACTCCAGAGGAGCACACAGCTGTCAGGTCTTCCTCGGTGGCCTCCAACACAAGCCCTAAAGACCCAGCTCCCAGCTCACCTCCTCACGAGGAAACAACAGCCCGGCCCGCCTCCCACCTTAGGGACTTCCCCAGCCAGGAGTTCCAGGCGGTGTTTGCGGAGGTCTGCTCCTGCACAGATGAGGGAGGGGCAGGAGGGAACAGCCCCCATCCTGAGGAGGCCCGACGGGGAGGTCGGGACCTGGGTGATGGCAGCAAGCCTCTAGATATTCTTAGTAGCTGTGAGACGGGGAAGTTTGCGATGATCGCGAAAGCTGTCGCCCAAGAAATGGAAAGCGAAGAGGAACGCTTGAGAGAAGCACAGACGAAAGACACCCAGCTTAAGTCTCCCAGACACTCTGAAGCAGAAACCAGAAAGGCCCCGTCACCAGCCCTCTGGGATCAAGAGAATGTGTTTAGTGAGCACAGCATCCCTTTAGGGGTGGAGTTTGTTGTGCCCAGGAGTGGGTTTTACTGCAAGCTGTGTGGATTGTTCTACACCAGTGAGGAAACAGCTAAAACATCCCATTGTCGGAGCAGCGTGCACTACAGGAATCTCCAGAAATATCTGTCGCAGTTAGCTGAGGAGAGcttgcacagcacacacaacaacacCACAAGCACCGAGGAGCCGGGGATTGTCCCACTGTTTGAAGGAGTGAACAAACCCTGTTGATGATGGATTGAGCTGTAAGCCAGTTACTGGAAACCCTGGAAGCCTTAAAAGCAGATGGATGTAAGCCTGAAAAATATGAGGAGCTAATCCGGCTCTCCATACAGAGTGCAGATGAATTCTGGTAAAAGATCCTATTAAAAGGGACAACTTCTGTAAAATCTCTCTGAAGcttgaactgaaatgtaactTTCAAATACAGTATTCTTTATCCAAATGTTAacctgtaatatatattttattgttacataGGCAGGTCAtcaaacaaatatcaaaatgCATCTAGTGACTTTGATGCTACCCTCAGGAAGTTTTGTAACGGTTTCAGTAGCACTAGAGATTTTGCCGCATGTGGTCTGTAGTACACTCTAACCTGGCTGCATTTACCTGCTGCCGTTTAACAACACTTTCCGAGTTCGAAACTGCAGAACTGAGACCATACAATATTCCATTCTCCAGAGAACtgtttcttattcattttcagGAATTTACATGTTTGCACAATGAACAttctacttttgtttttgttttgtttgtctttcttttttgaaaCTGTTCTGCAGTTTCTGTTACATTACAATCACGAAGACCTGCAGGGAATTATACAAAGTGTGGATTAATAGAGGTGTATGAGAATAATCCACCTCTGACCACAGGCCAAACGTAGCAGCTAGCAGCAAGTGTGTATAAACTGAATTTGTACTAATGTCGCTTCTTGTCTTCCAAAAAGTATAAGGAAAATGATCAAGCAATACAGTTGATCAGTGAGCGCAAAGGAGAACTAGAATCGCCAAAGCAAGCCTGTTGTGTCTTCTTAAATACTGTAATAACCCAGAGACCTGCAGCTTAGTGATGAGAAATAGGGACAGAAAAATGCATGGTCTAAATGcatgggtactccaggaccggtttgaaaactaCTGGTctaatggaaacaaaatatttaatcaaaatattgtgttttctatttttaagttaattttctaatattttgttttatttatttttacatgttttgtatgCACTTCTTGGGTGCCATAAGAAAGGCTTTGCTTAATAATAGCATTTCTGTAATGATAAGTGATTGTATCTCACCTTTGTTATTATTGCACAATCCCTATTTATATGAGTCTCAGTACGTTGAACCACATGTATTTGCCTCAGGAATCAATCAAAGGATGGTTAACAAAAATGTCAACTTTCTGAAATGATGTACTCAAgctgaaaatattttgagataaaaAATATGGACTATTATGCTCTGTATCTCATAATAATTTGAAGTATTCTGTAATTGAAGAAAACTAAGTATATTTTGAAGTATATTGTCTATGTAATGAACTTAATATTTAGTGATGAGAGTCACAAGattctgaaacaaataaatcctAATTTGACTGACTATTGTATCCATACACAACCcatgacaattaaaatacacatttaattgtgtttaaccATTATATTGACCCATcccatcaaatgtttttttttttttttttggccttaATCTCTCTCCTCACTGTTTTAACCCTGGGCTTTGGAGACGGCTCTAAATGTTTGTTCTTCTGATTTCTTAAAATGATAATAGAATGGTATTTAGATGCCACATGTCATCATCTTTGTCTAGTCATTTTGAACATCTGTTGTCAGGAAGGATAGTAAAATAGCTAATCATGTTAAACTTAAGACGGTGATCACAATCCATCAATGGTTTTGATGTGGTTAATTTCTCAGTTTAACAAGGTAAATTTGGAAGAATTTCAACCTTCAGCTGAGCTCTGGCTTTAATGTCCCAAGATCCAGTAGAATACACACCCCGGGGCTGCAAACAGCCAAGCCCAACTCATGTATTATGACACTTATGTCTGCTTTTGTTGGCTCATCTGTGAATCTCTGTCTGTAGCACAGAAGGGGCTTCTTACCAtaaatgacagttttttttcaaatcattgAACAATGTGAGAGAGATTGATTTATCCCAAAACTTcgtattttaaattttattttgaataatgaaaCATATTCAGGgaataatcatatatatataactggtGAAATACTTGAACTGGACCATTTGTGTGAttatatattgtgaaatataaagGAGTTTTGAATAGTGGGGGTTTTTTTGGAGAGGAGTGAGCAGTAGTTGGGGGCGTGAGGGGGTGTAAAAACTGGATTtagatttttcaattttctgtaCTGTGAATTCTATTGCACCAGGAACTATCTGTGGATTTTTAATTCTCC

Function

GO: NA

KEGG:

id description
K24052 RBM20; RNA-binding protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 809243 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 827789 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1091122 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1248848 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 515653 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 533281 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 535012 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1064190 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1777291 19548641 ~ 19548932 (-) True G142176
AMCG00003294 mRNA downstream 4383 17726060 ~ 17742906 (-) True AMCG00003294
AMCG00003292 mRNA downstream 44307 17688413 ~ 17702982 (-) True AMCG00003292
AMCG00003290 mRNA downstream 69443 17676623 ~ 17677846 (-) True AMCG00003290
AMCG00003289 mRNA downstream 289784 17457203 ~ 17457505 (-) True AMCG00003289
AMCG00003288 mRNA downstream 290103 17456513 ~ 17457186 (-) True AMCG00003288
AMCG00003297 mRNA upstream 46189 17817539 ~ 17823740 (-) True AMCG00003297
AMCG00003298 mRNA upstream 54584 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003296 mRNA upstream 78430 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003299 mRNA upstream 131951 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003300 mRNA upstream 153562 17924912 ~ 17926983 (-) True AMCG00003300
TU178404 other downstream 998858 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2629772 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3072869 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4316965 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1772298 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1781521 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1784093 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1794045 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1795563 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile