RNA id: AMCG00003294


Basic Information

Item Value
RNA id AMCG00003294
length 2146
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00003294
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17726060 ~ 17742906 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaaacaaaaacaacacacaagtTAAACTTGCAGTTGGGATCAGGGATTGAAGGGACGTCAGGTAACGAGAAGTTTGTCTGCATTGCACGCCGTTTGCAGATCACTTGTTAAAACATGGCAACTGAATGCGAGGCATGGCTTAATGCTAACCCTGTTGAGGCCGAGGCTCTCCGCGATTCCTTCTTGTCCGGCGATGACGAGAAAGTCGTGTCCACCAAGATCGACAATGAGATCAATGGAAACTGGATTGCTTCCACCTCCACCCTCCACGAGGCGCGCGTCAAGGCCAAGGCCAAGAGGCGGCTGAGGAAGAACTCCTCCCGAGACTCCGGCCGAGGAGACTCCCTGAGCGACAATGGGGAGAGCGTCCGAGGCCCGCAGGCCACGCCCACCAGCCCCAAGAGCAAACTGCTGGACAGGAAGTCCCGATCAGGAAAGGGGAGGGGCTTGCCAAAGAAAGGTGGTGCTGGAGGTAAAGGTGTGTGGGGCCCTCCTGGCGAGGTGTATGATCTTGAAGAAGTGGATGTCAAAGACCCCAATTATGATGATGATCAGGAAAGCTGCGTTTATGAAACAGTGGTCCTGCCCCTGGATGAAGGGGACTTTGAGAAGACCGTGACTCCCATTGAGCTGCTCAGTGAGCTTAACCTGGGCGATATGAAGAGTGGGGTTCCCATGCTGGCAGTTGCCCTGGCCCTGGAGGCGAAAGCCAGCCACAGGGAGCTGACCTCCCGGCTGCTGACCGACCTGTGTGGGAGGGTTCTGAGCCCTGACGATGTGGAGAAGTCTTTTGATAAGCTGCTGAGGGATCTGCCAGATCTGGTCCTGGACACCCCTGGGGCTCCTCAGCTTGTCGGTCAGTTTATTGCTCGAGCTGTTCGAGATCAGATCCTGTCCAGAAACTATATCGAGAGCTACAAAGGGAAAGTGGACTGTGAACATGCCAGAGCGGCTCTGGACAGGGCAGCGGTGCTGTTGAAAATGAGAGCAGGGATGCGCATGGACAGTGTCTGGGGGGCAGGAGGGGGGCAGAGGCCAGTCAAACAGCTCATCAGAGAGGTCAACCTACTGCTGAAGGAGTACCTGCTGTCTGGGGAGGTAGTGGAAGCAGAGAGGTGTCTGAAGGAACTAGAAGTACCGCACTTTCACCATGAGTTTGTGTATGAGgCAATAGTCATGGTCTTGGAATCGAAAGGggaaactgcttttaaaatggttcTGCAGCTGCTGAAATTTCTGTGGGAGTCCTCGGTCATCACTGTAGACCAGATGAGAAGGGGATTCCAGAGAGTTTACAGCGAGATCCCGGAAATCAACATTGATGTCCCTCGAGCTTACTCTTTACTGGAGCAGTTTGTGGAGCAGAGCTTCAGTGCAGGGGTTATTGACAAAAAGCTGAGGGACCTTTGTCCTTGCCGAGGCCGTAAGCGATTTGTAAGCGAGGGAGATGGTGGACGCCTTAAACTTGAAAGCTACTGAAGGGGACCTCTGGAAGTCTTTGGGCCAGTGTATGGAATCATGAAGATGCTTTTTACACTTCATATTCTTAACGGTTTAGGTACAAAAATGATCCTTgcaactggggaaaaaaaaaataaaaaaaaatgggggggtGAAACAAAAAAGGCACTTTTGATGCTTAAGATGGAATCTGAAAATTACACCTGAAAAGTGTTTTGAAATAAGCTAACTCTGAAAGTGCCAGACCTTCGATGATGTATTCATTCCATGTTTTGTATTGCAATTTCACTGCCACTCCTTTTTTCCCCTGACAGCAGTGTTTATATGTAAGAACCACTGGTTTGTGTAAGAAGCTTTATATCGGGGGTGTGGTGGGGAAATGTTTTGCTGTATGGAACAGCTACCCCCTCTGTCGGCTGCTATTGTTCATATGCTGtgcttatcttttttttttttttttttttttcttaaagttaaaaatgacattcagttgaaatggaacaaaaaaacaatccaggGCAAAGTAAACAATTAGGGaaaatttcacaaaatggtGTCTGGaacatctatttttatatataaaaacactggAAAGTGAAATGTACCCAGTCTTGCTCAGTGTTAATGTTTTGTGGGgggatacaaataaaaaaataaaaataaaaaacctgcaaagccttaca

Function

GO: NA

KEGG:

id description
K16865 PDCD4; programmed cell death protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 788014 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 806560 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1069893 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1227619 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 544097 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 561725 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 563456 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 1092634 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1805735 19548641 ~ 19548932 (-) True G142176
AMCG00003292 mRNA downstream 23078 17688413 ~ 17702982 (-) True AMCG00003292
AMCG00003290 mRNA downstream 48214 17676623 ~ 17677846 (-) True AMCG00003290
AMCG00003289 mRNA downstream 268555 17457203 ~ 17457505 (-) True AMCG00003289
AMCG00003288 mRNA downstream 268874 17456513 ~ 17457186 (-) True AMCG00003288
AMCG00003285 mRNA downstream 350906 17363794 ~ 17375154 (-) True AMCG00003285
AMCG00003293 mRNA upstream 4383 17747289 ~ 17771350 (-) True AMCG00003293
AMCG00003297 mRNA upstream 74633 17817539 ~ 17823740 (-) True AMCG00003297
AMCG00003298 mRNA upstream 83028 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003296 mRNA upstream 106874 17849780 ~ 17856520 (-) True AMCG00003296
AMCG00003299 mRNA upstream 160395 17903301 ~ 17906408 (-) True AMCG00003299
TU178404 other downstream 977629 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2608543 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3051640 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4295736 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1800742 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1809965 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1812537 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1822489 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1824007 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile