RNA id: AMCG00003296


Basic Information

Item Value
RNA id AMCG00003296
length 1786
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00003296
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17849780 ~ 17856520 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATCCGACGCCCACCGCGCCGGGCTCCATATTTGGTTTATGACGCAGTGATCCGGAGGTTCCATTCATATAAAATTGTTACAACGGAATCCCCTCGGAGGAAATGTAGGCACGGATCCGCTGCTGAGTGGTTGACACTCGGGCTGAAGTAGTAATTGATCATCCCAACGGCACACACAAGTCGCGTCTTTCTTTCAGCACCATTATACACTTGTGCTCCGTCGGCTTTATCAAAGACCGCAACATGAAGATCTCAAGTATCGACTGCCGCCGTCTGAAGAAAATCATCCGGAAGGAAGGCAGCAGCTGTCTGATCGTGGATTGCAGACCCTACTTCTCCTTCTCGACCTCCAACATCAAGGGCTCCGTCAACGCCAACCTGAACTCGGTCGTCGTCCGGAGATCGCGGGGAGGGCCGGTCCCTCTGCAGTTCGTCATCCCGGACGAGAGAGCCCAGCATCGGCTCCGAGAGGGGAGCATCTCCGCCGTGGTGGCTTTGGACGACCGGACGTCCCACTGGCAGAAACTGAAAAAGGACAGTGTCGCTCAGATTGTGATCAATACCCTCTCGCATCTAGCCAGTGGAGCCAAGATCtgttttctgaaagGGGGATATGAAAACTTCAATTCTCAGTACCCTGAACTTTGCACAGAGCTGAAAGCCATCGCTCAGGATGGaactgaaaatgacaaaatcCTCTGCAGCAGCCACTGTGACAAATTCGCTGGTAACCACAAACCGGATTATGATCAGGGCCAGCCAGTGGAAATCCTCCCTTTCCTTTACCTCGGCAGTGCCTACCACGCCTCCAGACAGGACTATCTCGGTGACCTTCACATCACAGCCTTGCTCAACGTCTCCCGGCGAGACACGGAGCAGGCGAAAGGCCAGTTCCTTTATAAATGGATTCCAGTGGAGGACAGTCACACGGCTGACATCAGCTCCCATTTCCAGGAAGCGATCAGCTTTATCGACTGTGTGAAGGAAGCTGGCGGAAAGGTTTTAGTTCATTGTGAAGCTGGAATCTCCAGGTCACCAACAATCTGCATGGCCTACATCATGAAGACCAAGAGACTGCAGCTGGAGGAGGCATTCGACTACATCAAGCAACGCCGGGCGCTGATCTCGCCTAACTTTGGGTTCATGGGCCAACTGCTCCAGTTTGAGTCTGAGGTCCTCTCCTCCACACCGCCCACCCCATCCTGCAAAAGAGACCATATGCCCTTCTTTGCAGAGGAATTTACCTTCAACAAGAACTATGAGGCCTCCGTTTTTGCCCTCCCTACCTCGTTTCTGACTCCCATGCCACTCCAGTCTCCAGTCCATCAGTTAAAGCTGAGTCCGATAACTGCATTGCCTTAATGTGAAGACTGGCACGTCCTTAGAttacttgaaaaagaaaattaaagacgCACAAATCTCTCCCAACTGACACTAGATGGGGAAAATAAAGGATTTTTCAAGAGCGTCGCTAACAGGACCAGTTATGATATCTCTCATATCCTAACGtcctcaataaaataaagtaaagacTGATGCTGTGGCCTTTGGCCCATTTTTGAAAAATGGAGCACAGAGGGATAAAAATAGTAAGATTTGCCTTATTTGAAAGATGTGATGCACACAAAGATGgacttcagtttaatttattacaatgtCAAATAATGTACAGAAATGGCAGGATGTAATTATAAACCGTTCTGCCTTTGTCTGAAAGTgctgtttttcaatatttattttgctaaagaAAATGAAGTGGAGATGCTAATAAAGTTATTTGCCAA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K04459 DUSP, MKP; dual specificity MAP kinase phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178467 lncRNA downstream 911734 16937634 ~ 16938046 (-) True G141879
TU178459 lncRNA downstream 930280 16914938 ~ 16919500 (-) True G141871
TU178367 lncRNA downstream 1193613 16653691 ~ 16656167 (-) True G141795
TU178297 lncRNA downstream 1351339 16494838 ~ 16498441 (-) False G141740
TU178713 lncRNA upstream 430483 18287003 ~ 18287212 (-) True G142060
TU178718 lncRNA upstream 448111 18304631 ~ 18304978 (-) True G142064
TU178720 lncRNA upstream 449842 18306362 ~ 18306683 (-) True G142066
TU178747 lncRNA upstream 979020 18835540 ~ 18837485 (-) True G142090
TU178861 lncRNA upstream 1692121 19548641 ~ 19548932 (-) True G142176
AMCG00003298 mRNA downstream 4542 17825934 ~ 17845238 (-) True AMCG00003298
AMCG00003297 mRNA downstream 26040 17817539 ~ 17823740 (-) True AMCG00003297
AMCG00003293 mRNA downstream 78430 17747289 ~ 17771350 (-) True AMCG00003293
AMCG00003294 mRNA downstream 106874 17726060 ~ 17742906 (-) True AMCG00003294
AMCG00003292 mRNA downstream 146798 17688413 ~ 17702982 (-) True AMCG00003292
AMCG00003299 mRNA upstream 46781 17903301 ~ 17906408 (-) True AMCG00003299
AMCG00003300 mRNA upstream 68392 17924912 ~ 17926983 (-) True AMCG00003300
AMCG00003304 mRNA upstream 83351 17939871 ~ 17970610 (-) True AMCG00003304
AMCG00003303 mRNA upstream 219407 18075927 ~ 18078987 (-) True AMCG00003303
AMCG00003307 mRNA upstream 985786 18842306 ~ 18888405 (-) True AMCG00003307
TU178404 other downstream 1101349 16748061 ~ 16748431 (-) True G141826
TU178070 other downstream 2732263 15081655 ~ 15117517 (-) False AMCG00003231
TU178022 other downstream 3175360 14669472 ~ 14674420 (-) True AMCG00003214
TU177540 other downstream 4419456 13427294 ~ 13430324 (-) False AMCG00003164
TU178860 other upstream 1687128 19543648 ~ 19544684 (-) False AMCG00003320
TU178862 other upstream 1696351 19552871 ~ 19554112 (-) False AMCG00003320
TU178865 other upstream 1698923 19555443 ~ 19563278 (-) False AMCG00003320
TU178867 other upstream 1708875 19565395 ~ 19566587 (-) False AMCG00003320
TU178878 other upstream 1710393 19566913 ~ 19569615 (-) False AMCG00003320

Expression Profile